Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2206 and GFF2207 overlap by 4 nucleotides GFF2207 and GFF2208 overlap by 8 nucleotides GFF2208 and GFF2209 are separated by 4 nucleotides
GFF2206 - Type II/IV secretion system protein TadC, associated with Flp pilus assembly, at 267,577 to 268,539
GFF2206
GFF2207 - Flp pilus assembly protein TadB, at 268,536 to 269,534
GFF2207
GFF2208 - Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily, at 269,527 to 270,840
GFF2208
GFF2209 - hypothetical protein, at 270,845 to 272,128
GFF2209
Position (kb) 269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.561 kb on - strand at 268.600 kb on + strand at 268.600 kb on + strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.604 kb on + strand at 268.604 kb on + strand at 268.605 kb on - strand at 268.659 kb on - strand, within GFF2207 at 269.037 kb on + strand, within GFF2207 at 269.041 kb on + strand, within GFF2207 at 269.042 kb on - strand, within GFF2207 at 269.172 kb on + strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.300 kb on + strand, within GFF2207 at 270.100 kb on + strand, within GFF2208 at 270.100 kb on + strand, within GFF2208 at 270.101 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.824 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 271.524 kb on + strand, within GFF2209
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 268,560 + -0.0 268,560 + +0.6 268,560 + -2.2 268,560 + -1.2 268,560 + -1.8 268,561 - +0.4 268,600 + -1.7 268,600 + +2.3 268,601 - +0.8 268,601 - -0.2 268,601 - -1.2 268,604 + -0.2 268,604 + +1.4 268,605 - -1.6 268,659 - GFF2207 0.12 -0.2 269,037 + GFF2207 0.50 -1.6 269,041 + GFF2207 0.51 -1.8 269,042 - GFF2207 0.51 +2.3 269,172 + GFF2207 0.64 +1.2 269,173 - GFF2207 0.64 -1.2 269,173 - GFF2207 0.64 -0.8 269,173 - GFF2207 0.64 +0.2 269,300 + GFF2207 0.76 +2.8 270,100 + GFF2208 0.44 +1.2 270,100 + GFF2208 0.44 -3.0 270,101 - GFF2208 0.44 +1.5 270,132 - GFF2208 0.46 -2.2 270,132 - GFF2208 0.46 -1.7 270,132 - GFF2208 0.46 -0.5 270,132 - GFF2208 0.46 +0.5 270,506 + GFF2208 0.75 +1.1 270,506 + GFF2208 0.75 -0.7 270,506 + GFF2208 0.75 +1.3 270,506 + GFF2208 0.75 +0.4 270,506 + GFF2208 0.75 -1.0 270,506 + GFF2208 0.75 -0.0 270,506 + GFF2208 0.75 +0.7 270,506 + GFF2208 0.75 -2.2 270,506 + GFF2208 0.75 +1.2 270,507 - GFF2208 0.75 -1.5 270,507 - GFF2208 0.75 +0.3 270,507 - GFF2208 0.75 +0.8 270,507 - GFF2208 0.75 +0.6 270,507 - GFF2208 0.75 +1.6 270,507 - GFF2208 0.75 -1.0 270,507 - GFF2208 0.75 +0.6 270,507 - GFF2208 0.75 -2.6 270,507 - GFF2208 0.75 -0.8 270,507 - GFF2208 0.75 -0.2 270,507 - GFF2208 0.75 +0.5 270,824 + -3.0 270,942 + -3.0 270,942 + +0.8 270,942 + -0.2 270,942 + -0.2 270,942 + +1.5 270,942 + +1.8 270,942 + +0.2 270,942 + -2.1 270,943 - -1.2 270,943 - +0.3 270,943 - +0.9 270,943 - -0.4 270,943 - -0.6 270,943 - -0.1 270,943 - -2.8 270,943 - +0.2 270,943 - -2.0 270,943 - -0.4 271,524 + GFF2209 0.53 +0.3
Or see this region's nucleotide sequence