Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2179 and GFF2180 overlap by 7 nucleotides GFF2180 and GFF2181 are separated by 18 nucleotides GFF2181 and GFF2182 are separated by 791 nucleotides
GFF2179 - hypothetical protein, at 233,623 to 234,042
GFF2179
GFF2180 - hypothetical protein, at 234,036 to 234,383
GFF2180
GFF2181 - no description, at 234,402 to 234,650
GFF2181
GFF2182 - Inner membrane component of TAM transport system, at 235,442 to 239,530
GFF2182
Position (kb) 234
235 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 233.529 kb on + strand at 233.556 kb on + strand at 233.556 kb on + strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.666 kb on - strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.404 kb on - strand at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.612 kb on + strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.864 kb on + strand at 234.865 kb on - strand at 234.869 kb on + strand at 234.869 kb on + strand at 234.870 kb on - strand at 234.870 kb on - strand at 234.910 kb on + strand at 234.910 kb on + strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.976 kb on + strand at 234.982 kb on - strand at 235.002 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.074 kb on - strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.357 kb on - strand at 235.357 kb on - strand at 235.357 kb on - strand at 235.368 kb on + strand at 235.368 kb on + strand at 235.368 kb on + strand at 235.369 kb on - strand at 235.369 kb on - strand at 235.398 kb on + strand at 235.399 kb on - strand at 235.399 kb on - strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.450 kb on - strand at 235.459 kb on + strand at 235.459 kb on + strand at 235.459 kb on + strand at 235.460 kb on - strand at 235.460 kb on - strand at 235.460 kb on - strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.528 kb on - strand at 235.528 kb on - strand at 235.528 kb on - strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 233,529 + +0.6 233,556 + -2.0 233,556 + -0.8 233,557 - -1.7 233,557 - +0.8 233,557 - +0.0 233,557 - +1.0 233,666 - GFF2179 0.10 -3.8 233,695 + GFF2179 0.17 -1.0 233,695 + GFF2179 0.17 -0.1 234,004 + +2.8 234,004 + +1.3 234,004 + -1.0 234,004 + -1.3 234,005 - -0.0 234,005 - -1.6 234,005 - +0.8 234,005 - +3.7 234,123 + GFF2180 0.25 +1.6 234,123 + GFF2180 0.25 -1.7 234,123 + GFF2180 0.25 -1.5 234,124 - GFF2180 0.25 -0.9 234,124 - GFF2180 0.25 -0.0 234,124 - GFF2180 0.25 -0.5 234,313 + GFF2180 0.80 -1.5 234,313 + GFF2180 0.80 -1.9 234,313 + GFF2180 0.80 +1.2 234,313 + GFF2180 0.80 -1.4 234,313 + GFF2180 0.80 -0.2 234,314 - GFF2180 0.80 -2.9 234,314 - GFF2180 0.80 -1.9 234,314 - GFF2180 0.80 -0.9 234,314 - GFF2180 0.80 -0.9 234,314 - GFF2180 0.80 +1.0 234,339 + GFF2180 0.87 -0.4 234,339 + GFF2180 0.87 -2.8 234,340 - GFF2180 0.87 -0.6 234,340 - GFF2180 0.87 +0.6 234,369 + -1.2 234,369 + -0.5 234,369 + +0.1 234,369 + -1.5 234,369 + +0.3 234,369 + -1.3 234,369 + -1.0 234,370 - +1.0 234,370 - -2.8 234,370 - -1.1 234,404 - +0.2 234,535 + GFF2181 0.53 -0.4 234,535 + GFF2181 0.53 -2.0 234,535 + GFF2181 0.53 +0.8 234,535 + GFF2181 0.53 -1.4 234,535 + GFF2181 0.53 +0.9 234,535 + GFF2181 0.53 -0.1 234,536 - GFF2181 0.54 -2.5 234,536 - GFF2181 0.54 -1.5 234,536 - GFF2181 0.54 -4.4 234,536 - GFF2181 0.54 -0.7 234,536 - GFF2181 0.54 -0.5 234,550 + GFF2181 0.59 -0.8 234,550 + GFF2181 0.59 -0.4 234,551 - GFF2181 0.60 -0.0 234,551 - GFF2181 0.60 -1.4 234,551 - GFF2181 0.60 -1.5 234,551 - GFF2181 0.60 +0.6 234,612 + GFF2181 0.84 +1.5 234,613 - GFF2181 0.85 +0.2 234,613 - GFF2181 0.85 +1.2 234,613 - GFF2181 0.85 -3.8 234,633 + +0.9 234,633 + -2.6 234,633 + -0.8 234,633 + -0.4 234,634 - -0.2 234,634 - +0.7 234,634 - +0.6 234,634 - -0.6 234,634 - +2.2 234,634 - +0.8 234,636 - +1.5 234,636 - -2.6 234,636 - +0.8 234,864 + -2.1 234,865 - +0.7 234,869 + -1.5 234,869 + +0.5 234,870 - +1.3 234,870 - -1.0 234,910 + -2.3 234,910 + -1.9 234,911 - -0.9 234,911 - -0.2 234,911 - -1.6 234,911 - +2.1 234,930 + -0.6 234,930 + -0.4 234,930 + +2.7 234,931 - -1.2 234,931 - -0.6 234,931 - -2.0 234,931 - -0.2 234,931 - -0.3 234,931 - -1.3 234,976 + +0.2 234,982 - -1.4 235,002 + -1.5 235,073 + -0.0 235,073 + +1.5 235,073 + +0.4 235,073 + -0.2 235,073 + -1.7 235,073 + -1.1 235,073 + -3.1 235,073 + -1.3 235,073 + +0.2 235,073 + +0.6 235,074 - +0.2 235,329 + +0.2 235,329 + +0.4 235,329 + -1.8 235,329 + -2.9 235,329 + -2.4 235,330 - -0.4 235,330 - -0.6 235,330 - -1.5 235,330 - -1.0 235,330 - -0.8 235,340 + +0.6 235,340 + -2.4 235,340 + -2.6 235,340 + -1.9 235,340 + -1.5 235,356 + -4.3 235,356 + -2.9 235,356 + -2.7 235,356 + -0.6 235,357 - -4.3 235,357 - -1.7 235,357 - -1.5 235,368 + -1.0 235,368 + +0.6 235,368 + -2.1 235,369 - -2.6 235,369 - +0.6 235,398 + -1.0 235,399 - -1.7 235,399 - +1.4 235,449 + -0.1 235,449 + -1.3 235,449 + +0.1 235,449 + +0.5 235,450 - -1.8 235,459 + +2.2 235,459 + -3.0 235,459 + +3.4 235,460 - +0.4 235,460 - -3.0 235,460 - -0.4 235,461 + -0.4 235,461 + -0.7 235,461 + -0.2 235,461 + +2.2 235,461 + -1.8 235,461 + -0.5 235,461 + +1.7 235,462 - -3.5 235,462 - -0.8 235,462 - +0.0 235,462 - +2.0 235,462 - -0.0 235,462 - +0.2 235,462 - -0.3 235,462 - -0.9 235,528 - +0.7 235,528 - -1.3 235,528 - +1.4 235,572 + +0.6 235,572 + +0.5 235,572 + -0.5 235,572 + -0.8 235,573 - +0.6 235,573 - -0.3 235,573 - +0.9 235,573 - +0.2 235,573 - -0.6 235,573 - -0.8 235,581 + -0.5 235,581 + -0.1 235,581 + -1.2 235,581 + -0.3 235,581 + -1.2 235,581 + -0.4 235,581 + -3.7 235,581 + +1.0 235,581 + +0.7 235,582 - +1.6 235,582 - -2.2 235,582 - +2.2 235,582 - -2.2 235,582 - +1.8 235,582 - -2.1 235,582 - -3.8 235,582 - -1.0 235,582 - +0.6 235,582 - +0.9 235,582 - +0.2 235,582 - -3.9
Or see this region's nucleotide sequence