Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2138 and GFF2139 overlap by 4 nucleotides GFF2139 and GFF2140 are separated by 52 nucleotides
GFF2138 - Ribose ABC transporter, permease protein RbsC (TC 3.A.1.2.1), at 186,720 to 187,709
GFF2138
GFF2139 - Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1), at 187,706 to 189,334
GFF2139
GFF2140 - Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1), at 189,387 to 190,340
GFF2140
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.270 kb on + strand, within GFF2138 at 187.270 kb on + strand, within GFF2138 at 187.271 kb on - strand, within GFF2138 at 187.582 kb on + strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.694 kb on + strand at 187.998 kb on + strand, within GFF2139 at 188.090 kb on + strand, within GFF2139 at 188.736 kb on + strand, within GFF2139 at 189.279 kb on + strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.388 kb on + strand at 189.580 kb on + strand, within GFF2140 at 189.713 kb on + strand, within GFF2140 at 189.713 kb on + strand, within GFF2140 at 189.714 kb on - strand, within GFF2140 at 189.791 kb on - strand, within GFF2140 at 190.153 kb on + strand, within GFF2140 at 190.153 kb on + strand, within GFF2140 at 190.153 kb on + strand, within GFF2140 at 190.154 kb on - strand, within GFF2140 at 190.154 kb on - strand, within GFF2140 at 190.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 187,270 + GFF2138 0.56 +0.8 187,270 + GFF2138 0.56 -0.8 187,271 - GFF2138 0.56 +0.5 187,582 + GFF2138 0.87 +0.7 187,583 - GFF2138 0.87 +0.4 187,583 - GFF2138 0.87 -1.4 187,642 + +0.4 187,642 + +0.4 187,642 + -1.7 187,642 + -1.0 187,642 + +0.5 187,642 + -2.0 187,643 - +1.0 187,643 - -0.2 187,643 - +0.2 187,643 - +2.2 187,643 - -0.1 187,643 - -0.3 187,694 + +0.3 187,998 + GFF2139 0.18 +0.2 188,090 + GFF2139 0.24 -0.3 188,736 + GFF2139 0.63 +1.1 189,279 + +0.9 189,279 + +2.7 189,279 + -3.6 189,279 + -1.3 189,279 + -1.5 189,388 + -2.8 189,580 + GFF2140 0.20 -2.4 189,713 + GFF2140 0.34 +0.1 189,713 + GFF2140 0.34 -1.5 189,714 - GFF2140 0.34 -0.9 189,791 - GFF2140 0.42 -0.2 190,153 + GFF2140 0.80 +0.9 190,153 + GFF2140 0.80 +0.3 190,153 + GFF2140 0.80 -1.7 190,154 - GFF2140 0.80 -1.2 190,154 - GFF2140 0.80 -0.8 190,322 + +1.7
Or see this region's nucleotide sequence