Strain Fitness in Variovorax sp. SCN45 around GFF2124

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2121 and GFF2122 are separated by 5 nucleotidesGFF2122 and GFF2123 are separated by 27 nucleotidesGFF2123 and GFF2124 are separated by 36 nucleotidesGFF2124 and GFF2125 are separated by 128 nucleotidesGFF2125 and GFF2126 are separated by 321 nucleotides GFF2121 - Type IV fimbrial biogenesis protein PilY1, at 169,825 to 173,256 GFF2121 GFF2122 - Type IV pilus biogenesis protein PilE, at 173,262 to 173,714 GFF2122 GFF2123 - Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II, at 173,742 to 174,218 GFF2123 GFF2124 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, thiol-disulfide reductase involved in Cu(I) insertion into CoxII Cu(A) center, at 174,255 to 174,872 GFF2124 GFF2125 - hypothetical protein, at 175,001 to 175,351 GFF2125 GFF2126 - hypothetical protein, at 175,673 to 176,338 GFF2126 Position (kb) 174 175Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 173.289 kb on - strandat 173.289 kb on - strandat 173.289 kb on - strandat 173.383 kb on - strand, within GFF2122at 173.383 kb on - strand, within GFF2122at 173.383 kb on - strand, within GFF2122at 173.460 kb on + strand, within GFF2122at 173.461 kb on - strand, within GFF2122at 173.474 kb on + strand, within GFF2122at 173.475 kb on - strand, within GFF2122at 173.475 kb on - strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.481 kb on + strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.482 kb on - strand, within GFF2122at 173.485 kb on + strand, within GFF2122at 173.486 kb on - strand, within GFF2122at 173.537 kb on + strand, within GFF2122at 173.538 kb on - strand, within GFF2122at 173.538 kb on - strand, within GFF2122at 173.538 kb on - strand, within GFF2122at 173.556 kb on + strand, within GFF2122at 173.557 kb on - strand, within GFF2122at 173.649 kb on + strand, within GFF2122at 173.649 kb on + strand, within GFF2122at 173.649 kb on + strand, within GFF2122at 173.649 kb on + strand, within GFF2122at 173.649 kb on + strand, within GFF2122at 173.649 kb on + strand, within GFF2122at 173.649 kb on + strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.650 kb on - strand, within GFF2122at 173.882 kb on - strand, within GFF2123at 173.918 kb on - strand, within GFF2123at 173.918 kb on - strand, within GFF2123at 174.286 kb on - strandat 174.361 kb on + strand, within GFF2124at 174.361 kb on + strand, within GFF2124at 174.361 kb on + strand, within GFF2124at 174.362 kb on - strand, within GFF2124at 174.388 kb on + strand, within GFF2124at 174.416 kb on - strand, within GFF2124at 174.416 kb on - strand, within GFF2124at 174.467 kb on - strand, within GFF2124at 174.502 kb on + strand, within GFF2124at 174.736 kb on + strand, within GFF2124at 174.736 kb on + strand, within GFF2124at 174.736 kb on + strand, within GFF2124at 174.736 kb on + strand, within GFF2124at 174.737 kb on - strand, within GFF2124at 174.737 kb on - strand, within GFF2124at 174.737 kb on - strand, within GFF2124at 174.737 kb on - strand, within GFF2124at 175.168 kb on + strand, within GFF2125at 175.168 kb on + strand, within GFF2125at 175.169 kb on - strand, within GFF2125at 175.169 kb on - strand, within GFF2125at 175.169 kb on - strand, within GFF2125at 175.392 kb on + strandat 175.392 kb on + strandat 175.444 kb on + strandat 175.444 kb on + strandat 175.444 kb on + strandat 175.445 kb on - strandat 175.445 kb on - strandat 175.648 kb on + strandat 175.648 kb on + strandat 175.648 kb on + strandat 175.649 kb on - strandat 175.790 kb on + strand, within GFF2126at 175.791 kb on - strand, within GFF2126

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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173,289 - +0.6
173,289 - +0.2
173,289 - -2.3
173,383 - GFF2122 0.27 -1.0
173,383 - GFF2122 0.27 -1.5
173,383 - GFF2122 0.27 +0.8
173,460 + GFF2122 0.44 +1.7
173,461 - GFF2122 0.44 -2.1
173,474 + GFF2122 0.47 -1.3
173,475 - GFF2122 0.47 -0.4
173,475 - GFF2122 0.47 -1.4
173,481 + GFF2122 0.48 +0.2
173,481 + GFF2122 0.48 -1.6
173,481 + GFF2122 0.48 -2.2
173,481 + GFF2122 0.48 -2.1
173,481 + GFF2122 0.48 -1.0
173,481 + GFF2122 0.48 +0.6
173,481 + GFF2122 0.48 +0.4
173,481 + GFF2122 0.48 -2.7
173,481 + GFF2122 0.48 -0.9
173,481 + GFF2122 0.48 +1.8
173,481 + GFF2122 0.48 +1.6
173,481 + GFF2122 0.48 -0.8
173,481 + GFF2122 0.48 -1.7
173,482 - GFF2122 0.49 -2.7
173,482 - GFF2122 0.49 +0.9
173,482 - GFF2122 0.49 -1.7
173,482 - GFF2122 0.49 -0.8
173,482 - GFF2122 0.49 -1.8
173,482 - GFF2122 0.49 -3.9
173,482 - GFF2122 0.49 +0.2
173,482 - GFF2122 0.49 +0.8
173,482 - GFF2122 0.49 -0.5
173,482 - GFF2122 0.49 -0.2
173,482 - GFF2122 0.49 +0.2
173,482 - GFF2122 0.49 -3.0
173,482 - GFF2122 0.49 +1.2
173,482 - GFF2122 0.49 -2.6
173,482 - GFF2122 0.49 +0.7
173,482 - GFF2122 0.49 -3.0
173,482 - GFF2122 0.49 -0.4
173,482 - GFF2122 0.49 -2.8
173,482 - GFF2122 0.49 -1.7
173,482 - GFF2122 0.49 -0.4
173,482 - GFF2122 0.49 -1.2
173,482 - GFF2122 0.49 +0.6
173,482 - GFF2122 0.49 +0.5
173,485 + GFF2122 0.49 -0.6
173,486 - GFF2122 0.49 +1.0
173,537 + GFF2122 0.61 -0.0
173,538 - GFF2122 0.61 +0.6
173,538 - GFF2122 0.61 -2.9
173,538 - GFF2122 0.61 -0.4
173,556 + GFF2122 0.65 +1.4
173,557 - GFF2122 0.65 -1.4
173,649 + GFF2122 0.85 -2.5
173,649 + GFF2122 0.85 +1.6
173,649 + GFF2122 0.85 +0.0
173,649 + GFF2122 0.85 +0.7
173,649 + GFF2122 0.85 +0.6
173,649 + GFF2122 0.85 -2.6
173,649 + GFF2122 0.85 +1.4
173,650 - GFF2122 0.86 -2.0
173,650 - GFF2122 0.86 +2.2
173,650 - GFF2122 0.86 +1.9
173,650 - GFF2122 0.86 -0.6
173,650 - GFF2122 0.86 -0.9
173,650 - GFF2122 0.86 +1.2
173,650 - GFF2122 0.86 -0.2
173,650 - GFF2122 0.86 +1.8
173,882 - GFF2123 0.29 +2.2
173,918 - GFF2123 0.37 -0.7
173,918 - GFF2123 0.37 -2.0
174,286 - -0.1
174,361 + GFF2124 0.17 -0.7
174,361 + GFF2124 0.17 -1.5
174,361 + GFF2124 0.17 -1.4
174,362 - GFF2124 0.17 -1.0
174,388 + GFF2124 0.22 +0.1
174,416 - GFF2124 0.26 -0.8
174,416 - GFF2124 0.26 -1.5
174,467 - GFF2124 0.34 -0.0
174,502 + GFF2124 0.40 -3.0
174,736 + GFF2124 0.78 -1.4
174,736 + GFF2124 0.78 -2.6
174,736 + GFF2124 0.78 -1.6
174,736 + GFF2124 0.78 +0.6
174,737 - GFF2124 0.78 -1.4
174,737 - GFF2124 0.78 -1.7
174,737 - GFF2124 0.78 +0.8
174,737 - GFF2124 0.78 -0.2
175,168 + GFF2125 0.48 -2.5
175,168 + GFF2125 0.48 +0.2
175,169 - GFF2125 0.48 +0.6
175,169 - GFF2125 0.48 -1.6
175,169 - GFF2125 0.48 -1.7
175,392 + +0.3
175,392 + -0.3
175,444 + +1.0
175,444 + -1.5
175,444 + -0.7
175,445 - -1.2
175,445 - -0.9
175,648 + -1.2
175,648 + +0.2
175,648 + +0.5
175,649 - +0.9
175,790 + GFF2126 0.18 +2.0
175,791 - GFF2126 0.18 +0.2

Or see this region's nucleotide sequence