Strain Fitness in Variovorax sp. SCN45 around GFF2091

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
138,040	+		GFF2090	0.11	-1.5
138,041	-		GFF2090	0.11	+1.2
138,346	+		GFF2090	0.40	-0.4
138,347	-		GFF2090	0.40	+1.2
138,347	-		GFF2090	0.40	+1.2
138,499	+		GFF2090	0.54	+1.2
138,500	-		GFF2090	0.54	-0.6
138,500	-		GFF2090	0.54	-1.0
138,500	-		GFF2090	0.54	-1.1
138,500	-		GFF2090	0.54	-1.1
138,877	+		GFF2090	0.90	+0.2
138,877	+		GFF2090	0.90	-0.8
139,230	-		GFF2091	0.25	-1.6
139,535	+		GFF2091	0.57	-3.1
139,535	+		GFF2091	0.57	+0.2
139,535	+		GFF2091	0.57	-1.0
139,823	+		GFF2091	0.87	-1.1
139,823	+		GFF2091	0.87	-2.7
139,824	-		GFF2091	0.87	+0.9
139,946	+				+0.7
139,946	+				+0.2
140,061	-				-2.0
140,061	-				-1.3
140,113	+				-0.5
140,113	+				+0.3
140,113	+				+0.5
140,113	+				+1.2
140,114	-				+0.8
140,114	-				-2.5
140,114	-				+4.2
140,116	+				-0.3
140,116	+				+0.2
140,116	+				-0.0
140,116	+				+0.9
140,116	+				+1.2
140,116	+				-1.9
140,117	-				-0.7
140,117	-				+0.5
140,117	-				-1.9
140,359	+		GFF2093	0.17	-1.4
140,359	+		GFF2093	0.17	-0.1
140,359	+		GFF2093	0.17	-1.4
140,359	+		GFF2093	0.17	+0.9
140,359	+		GFF2093	0.17	-0.5
140,359	+		GFF2093	0.17	+1.6
140,359	+		GFF2093	0.17	-0.3
140,359	+		GFF2093	0.17	-0.8
140,359	+		GFF2093	0.17	-0.8
140,359	+		GFF2093	0.17	+1.4
140,359	+		GFF2093	0.17	-3.9
140,359	+		GFF2093	0.17	-0.1
140,360	-		GFF2093	0.17	-1.0
140,360	-		GFF2093	0.17	+0.3
140,360	-		GFF2093	0.17	+1.2
140,360	-		GFF2093	0.17	+2.4
140,360	-		GFF2093	0.17	-0.2
140,360	-		GFF2093	0.17	-0.8
140,360	-		GFF2093	0.17	-0.5
140,360	-		GFF2093	0.17	+1.1
140,360	-		GFF2093	0.17	+1.2
140,360	-		GFF2093	0.17	-1.3
140,443	+		GFF2093	0.22	-0.6
140,443	+		GFF2093	0.22	+0.5
140,443	+		GFF2093	0.22	+1.1
140,443	+		GFF2093	0.22	-0.3
140,443	+		GFF2093	0.22	-0.6
140,443	+		GFF2093	0.22	+0.5
140,444	-		GFF2093	0.22	-3.1
140,444	-		GFF2093	0.22	+0.8
140,511	+		GFF2093	0.25	+0.2
140,511	+		GFF2093	0.25	-0.9
140,511	+		GFF2093	0.25	-0.5
140,511	+		GFF2093	0.25	-1.7
140,512	-		GFF2093	0.26	-0.1
140,512	-		GFF2093	0.26	-2.1
140,512	-		GFF2093	0.26	+0.7
140,512	-		GFF2093	0.26	-2.5
140,641	+		GFF2093	0.33	+0.2
140,641	+		GFF2093	0.33	-0.4
140,641	+		GFF2093	0.33	-0.8
140,641	+		GFF2093	0.33	-0.9
140,641	+		GFF2093	0.33	-1.0
140,641	+		GFF2093	0.33	-0.5
140,641	+		GFF2093	0.33	-0.5
140,642	-		GFF2093	0.33	-2.0
140,642	-		GFF2093	0.33	+0.7
140,642	-		GFF2093	0.33	-1.0
140,706	+		GFF2093	0.37	+0.9
140,706	+		GFF2093	0.37	+0.7
140,706	+		GFF2093	0.37	-1.4
140,706	+		GFF2093	0.37	+0.2
140,707	-		GFF2093	0.37	-0.1
140,707	-		GFF2093	0.37	-3.5