Strain Fitness in Variovorax sp. SCN45 around GFF2022

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2021 and GFF2022 overlap by 4 nucleotidesGFF2022 and GFF2023 are separated by 137 nucleotides GFF2021 - FIG00538369: hypothetical protein, at 64,703 to 65,926 GFF2021 GFF2022 - Acyl-CoA dehydrogenase, at 65,923 to 67,092 GFF2022 GFF2023 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 67,230 to 68,150 GFF2023 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 64.988 kb on + strand, within GFF2021at 64.989 kb on - strand, within GFF2021at 64.989 kb on - strand, within GFF2021at 65.031 kb on - strand, within GFF2021at 65.066 kb on + strand, within GFF2021at 65.066 kb on + strand, within GFF2021at 65.067 kb on - strand, within GFF2021at 65.085 kb on - strand, within GFF2021at 65.102 kb on + strand, within GFF2021at 65.102 kb on + strand, within GFF2021at 65.420 kb on + strand, within GFF2021at 65.421 kb on - strand, within GFF2021at 65.456 kb on + strand, within GFF2021at 65.457 kb on - strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.708 kb on + strand, within GFF2021at 66.001 kb on + strandat 66.002 kb on - strandat 66.493 kb on + strand, within GFF2022at 66.493 kb on + strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.727 kb on + strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.853 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.899 kb on - strand, within GFF2022at 66.899 kb on - strand, within GFF2022at 66.964 kb on + strand, within GFF2022at 66.964 kb on + strand, within GFF2022at 66.965 kb on - strand, within GFF2022at 66.976 kb on + strandat 66.976 kb on + strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.010 kb on + strandat 67.010 kb on + strandat 67.010 kb on + strandat 67.087 kb on + strandat 67.087 kb on + strandat 67.088 kb on - strandat 67.137 kb on + strandat 67.137 kb on + strandat 67.138 kb on - strandat 67.138 kb on - strandat 67.138 kb on - strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.458 kb on + strand, within GFF2023at 67.458 kb on + strand, within GFF2023at 67.459 kb on - strand, within GFF2023at 67.723 kb on - strand, within GFF2023at 67.875 kb on + strand, within GFF2023at 67.875 kb on + strand, within GFF2023at 67.876 kb on - strand, within GFF2023at 67.966 kb on - strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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64,988 + GFF2021 0.23 -0.1
64,989 - GFF2021 0.23 -3.2
64,989 - GFF2021 0.23 -0.4
65,031 - GFF2021 0.27 -1.3
65,066 + GFF2021 0.30 -1.4
65,066 + GFF2021 0.30 +1.7
65,067 - GFF2021 0.30 +0.6
65,085 - GFF2021 0.31 -0.5
65,102 + GFF2021 0.33 +1.3
65,102 + GFF2021 0.33 -0.8
65,420 + GFF2021 0.59 -1.1
65,421 - GFF2021 0.59 -1.0
65,456 + GFF2021 0.62 -2.7
65,457 - GFF2021 0.62 -0.6
65,567 + GFF2021 0.71 -0.7
65,567 + GFF2021 0.71 +1.3
65,567 + GFF2021 0.71 -2.7
65,567 + GFF2021 0.71 -2.1
65,568 - GFF2021 0.71 -2.2
65,568 - GFF2021 0.71 +2.7
65,568 - GFF2021 0.71 -0.4
65,568 - GFF2021 0.71 +1.5
65,708 + GFF2021 0.82 +0.4
66,001 + -0.8
66,002 - -0.1
66,493 + GFF2022 0.49 +0.2
66,493 + GFF2022 0.49 -1.2
66,494 - GFF2022 0.49 -3.0
66,494 - GFF2022 0.49 -0.0
66,494 - GFF2022 0.49 -2.7
66,637 + GFF2022 0.61 -2.2
66,637 + GFF2022 0.61 -1.0
66,637 + GFF2022 0.61 -2.1
66,638 - GFF2022 0.61 -1.5
66,638 - GFF2022 0.61 -2.8
66,638 - GFF2022 0.61 -0.3
66,638 - GFF2022 0.61 -0.9
66,727 + GFF2022 0.69 -1.4
66,728 - GFF2022 0.69 -1.7
66,728 - GFF2022 0.69 +0.1
66,728 - GFF2022 0.69 -1.6
66,853 + GFF2022 0.79 -0.4
66,898 + GFF2022 0.83 -2.5
66,898 + GFF2022 0.83 -0.6
66,898 + GFF2022 0.83 -1.8
66,898 + GFF2022 0.83 -0.3
66,898 + GFF2022 0.83 +0.9
66,899 - GFF2022 0.83 -1.5
66,899 - GFF2022 0.83 -0.2
66,964 + GFF2022 0.89 -0.9
66,964 + GFF2022 0.89 +0.2
66,965 - GFF2022 0.89 -1.9
66,976 + -2.5
66,976 + +0.5
66,977 - +0.5
66,977 - -1.4
66,977 - -2.3
66,977 - +0.1
66,977 - -0.9
66,977 - -0.4
66,977 - +0.3
66,977 - -1.4
67,006 + +0.0
67,006 + +1.2
67,006 + -1.4
67,006 + +2.0
67,006 + -2.1
67,006 + +2.0
67,006 + +1.0
67,006 + -1.5
67,006 + +1.3
67,006 + +0.3
67,006 + -0.4
67,007 - -4.4
67,007 - +0.8
67,007 - +2.2
67,007 - -0.3
67,007 - -2.0
67,010 + -1.1
67,010 + -0.3
67,010 + -1.1
67,087 + -0.5
67,087 + -3.1
67,088 - -1.1
67,137 + +1.0
67,137 + +2.4
67,138 - +0.4
67,138 - -0.7
67,138 - -1.0
67,155 + +0.6
67,155 + -3.1
67,156 - +3.2
67,156 - -0.4
67,458 + GFF2023 0.25 +0.2
67,458 + GFF2023 0.25 -1.0
67,459 - GFF2023 0.25 +0.2
67,723 - GFF2023 0.54 -0.4
67,875 + GFF2023 0.70 -1.3
67,875 + GFF2023 0.70 -0.2
67,876 - GFF2023 0.70 +0.8
67,966 - GFF2023 0.80 -3.1
68,010 + GFF2023 0.85 +1.3
68,010 + GFF2023 0.85 -2.5
68,010 + GFF2023 0.85 -1.7
68,010 + GFF2023 0.85 -3.8
68,011 - GFF2023 0.85 +1.0
68,011 - GFF2023 0.85 -0.4
68,011 - GFF2023 0.85 -2.5
68,011 - GFF2023 0.85 +3.5
68,011 - GFF2023 0.85 -2.2
68,011 - GFF2023 0.85 -1.5
68,076 + +0.5
68,076 + +0.5
68,076 + -3.5
68,076 + +0.9
68,076 + +1.1
68,076 + -1.9
68,077 - -0.8
68,077 - -3.0
68,077 - -2.4
68,077 - -0.3
68,077 - -2.5
68,077 - +2.6
68,077 - -2.0

Or see this region's nucleotide sequence