Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1945 and GFF1946 are separated by 163 nucleotides GFF1946 and GFF1947 are separated by 432 nucleotides
GFF1945 - FIG01003589: hypothetical protein, at 639,647 to 640,846
GFF1945
GFF1946 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 641,010 to 642,365
GFF1946
GFF1947 - no description, at 642,798 to 643,439
GFF1947
Position (kb) 641
642
643 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 640.134 kb on + strand, within GFF1945 at 640.308 kb on + strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.317 kb on + strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.555 kb on - strand, within GFF1945 at 640.555 kb on - strand, within GFF1945 at 640.696 kb on - strand, within GFF1945 at 640.869 kb on - strand at 641.163 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.316 kb on + strand, within GFF1946 at 641.317 kb on - strand, within GFF1946 at 641.317 kb on - strand, within GFF1946 at 641.317 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.457 kb on + strand, within GFF1946 at 641.634 kb on + strand, within GFF1946 at 641.635 kb on - strand, within GFF1946 at 641.635 kb on - strand, within GFF1946 at 641.635 kb on - strand, within GFF1946 at 641.727 kb on + strand, within GFF1946 at 642.117 kb on + strand, within GFF1946 at 642.118 kb on - strand, within GFF1946 at 642.222 kb on - strand, within GFF1946 at 642.238 kb on + strand at 642.238 kb on + strand at 642.238 kb on + strand at 642.238 kb on + strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.313 kb on + strand at 642.314 kb on - strand at 642.314 kb on - strand at 642.314 kb on - strand at 642.314 kb on - strand at 642.428 kb on - strand at 642.441 kb on + strand at 642.441 kb on + strand at 642.441 kb on + strand at 642.442 kb on - strand at 642.442 kb on - strand at 642.442 kb on - strand at 642.479 kb on + strand at 642.479 kb on + strand at 642.479 kb on + strand at 642.479 kb on + strand at 642.480 kb on - strand at 642.480 kb on - strand at 642.483 kb on + strand at 642.483 kb on + strand at 642.484 kb on - strand at 642.484 kb on - strand at 642.484 kb on - strand at 642.484 kb on - strand at 642.500 kb on + strand at 642.501 kb on - strand at 642.607 kb on + strand at 642.607 kb on + strand at 642.607 kb on + strand at 642.608 kb on - strand at 642.608 kb on - strand at 642.626 kb on + strand at 642.627 kb on - strand at 642.797 kb on + strand at 642.798 kb on - strand at 642.908 kb on - strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.042 kb on + strand, within GFF1947
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 640,134 + GFF1945 0.41 -1.0 640,308 + GFF1945 0.55 -2.4 640,309 - GFF1945 0.55 -1.1 640,309 - GFF1945 0.55 +0.9 640,309 - GFF1945 0.55 +0.0 640,317 + GFF1945 0.56 -0.3 640,318 - GFF1945 0.56 -0.1 640,318 - GFF1945 0.56 +0.4 640,318 - GFF1945 0.56 +0.6 640,555 - GFF1945 0.76 +0.8 640,555 - GFF1945 0.76 -1.1 640,696 - GFF1945 0.87 -1.3 640,869 - -1.0 641,163 + GFF1946 0.11 +1.3 641,313 + GFF1946 0.22 -0.4 641,313 + GFF1946 0.22 -1.1 641,313 + GFF1946 0.22 -0.1 641,313 + GFF1946 0.22 -0.6 641,313 + GFF1946 0.22 -1.5 641,316 + GFF1946 0.23 -0.2 641,317 - GFF1946 0.23 -1.1 641,317 - GFF1946 0.23 +1.8 641,317 - GFF1946 0.23 -1.5 641,416 - GFF1946 0.30 +0.2 641,416 - GFF1946 0.30 -0.4 641,416 - GFF1946 0.30 +0.9 641,416 - GFF1946 0.30 -1.5 641,457 + GFF1946 0.33 +0.1 641,634 + GFF1946 0.46 -1.0 641,635 - GFF1946 0.46 +1.7 641,635 - GFF1946 0.46 +0.5 641,635 - GFF1946 0.46 -0.1 641,727 + GFF1946 0.53 +0.7 642,117 + GFF1946 0.82 -1.0 642,118 - GFF1946 0.82 +0.7 642,222 - GFF1946 0.89 +1.7 642,238 + -0.9 642,238 + -2.1 642,238 + +1.6 642,238 + +0.2 642,239 - +1.1 642,239 - -2.3 642,239 - -1.0 642,239 - -1.5 642,239 - -2.9 642,313 + -0.0 642,314 - -0.3 642,314 - -0.1 642,314 - -1.7 642,314 - +1.5 642,428 - -0.6 642,441 + -3.9 642,441 + -2.2 642,441 + -1.6 642,442 - -1.7 642,442 - -2.4 642,442 - +0.7 642,479 + -1.4 642,479 + -0.0 642,479 + -0.0 642,479 + +1.6 642,480 - -0.8 642,480 - +1.6 642,483 + -0.6 642,483 + +2.2 642,484 - -1.0 642,484 - +0.8 642,484 - -0.1 642,484 - -1.6 642,500 + -0.9 642,501 - +0.3 642,607 + -0.4 642,607 + +1.1 642,607 + +0.8 642,608 - +0.8 642,608 - +0.7 642,626 + -1.7 642,627 - -1.3 642,797 + -0.4 642,798 - -0.2 642,908 - GFF1947 0.17 -0.4 643,042 + GFF1947 0.38 -0.2 643,042 + GFF1947 0.38 +0.3 643,042 + GFF1947 0.38 -1.1
Or see this region's nucleotide sequence