Strain Fitness in Variovorax sp. SCN45 around GFF1882

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1881 and GFF1882 overlap by 4 nucleotidesGFF1882 and GFF1883 are separated by 45 nucleotidesGFF1883 and GFF1884 are separated by 11 nucleotides GFF1881 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-) / 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-), at 555,177 to 557,003 GFF1881 GFF1882 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-), at 557,000 to 558,055 GFF1882 GFF1883 - putative signal-transduction protein with CBS domains, at 558,101 to 558,538 GFF1883 GFF1884 - Gluconokinase (EC 2.7.1.12), at 558,550 to 559,071 GFF1884 Position (kb) 556 557 558 559Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 556.101 kb on + strand, within GFF1881at 556.101 kb on + strand, within GFF1881at 556.102 kb on - strand, within GFF1881at 556.203 kb on + strand, within GFF1881at 556.204 kb on - strand, within GFF1881at 556.392 kb on + strand, within GFF1881at 556.393 kb on - strand, within GFF1881at 556.393 kb on - strand, within GFF1881at 556.453 kb on - strand, within GFF1881at 556.453 kb on - strand, within GFF1881at 556.521 kb on + strand, within GFF1881at 556.521 kb on + strand, within GFF1881at 556.521 kb on + strand, within GFF1881at 556.522 kb on - strand, within GFF1881at 556.522 kb on - strand, within GFF1881at 556.551 kb on + strand, within GFF1881at 556.552 kb on - strand, within GFF1881at 556.561 kb on - strand, within GFF1881at 556.581 kb on + strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.587 kb on + strand, within GFF1881at 556.587 kb on + strand, within GFF1881at 556.587 kb on + strand, within GFF1881at 556.588 kb on - strand, within GFF1881at 556.588 kb on - strand, within GFF1881at 556.588 kb on - strand, within GFF1881at 556.689 kb on + strand, within GFF1881at 556.690 kb on - strand, within GFF1881at 557.006 kb on + strandat 557.006 kb on + strandat 557.006 kb on + strandat 557.006 kb on + strandat 557.007 kb on - strandat 557.007 kb on - strandat 557.007 kb on - strandat 557.075 kb on + strandat 557.075 kb on + strandat 557.076 kb on - strandat 557.222 kb on + strand, within GFF1882at 557.223 kb on - strand, within GFF1882at 557.223 kb on - strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.316 kb on - strand, within GFF1882at 557.316 kb on - strand, within GFF1882at 557.316 kb on - strand, within GFF1882at 557.402 kb on + strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.426 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.550 kb on - strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.925 kb on - strand, within GFF1882at 558.874 kb on + strand, within GFF1884at 558.875 kb on - strand, within GFF1884at 558.875 kb on - strand, within GFF1884

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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556,101 + GFF1881 0.51 +0.5
556,101 + GFF1881 0.51 -1.4
556,102 - GFF1881 0.51 +0.4
556,203 + GFF1881 0.56 +0.6
556,204 - GFF1881 0.56 +2.2
556,392 + GFF1881 0.67 -0.4
556,393 - GFF1881 0.67 +0.4
556,393 - GFF1881 0.67 -0.8
556,453 - GFF1881 0.70 -3.5
556,453 - GFF1881 0.70 +2.5
556,521 + GFF1881 0.74 +0.3
556,521 + GFF1881 0.74 +1.0
556,521 + GFF1881 0.74 -0.1
556,522 - GFF1881 0.74 -0.6
556,522 - GFF1881 0.74 -0.3
556,551 + GFF1881 0.75 +1.2
556,552 - GFF1881 0.75 +1.2
556,561 - GFF1881 0.76 -0.6
556,581 + GFF1881 0.77 -1.4
556,582 - GFF1881 0.77 -1.5
556,582 - GFF1881 0.77 -1.5
556,582 - GFF1881 0.77 -1.4
556,582 - GFF1881 0.77 -1.4
556,587 + GFF1881 0.77 +0.6
556,587 + GFF1881 0.77 -0.6
556,587 + GFF1881 0.77 -0.5
556,588 - GFF1881 0.77 -0.1
556,588 - GFF1881 0.77 -0.1
556,588 - GFF1881 0.77 -2.0
556,689 + GFF1881 0.83 +1.7
556,690 - GFF1881 0.83 -1.1
557,006 + +2.1
557,006 + +2.5
557,006 + -3.3
557,006 + -1.1
557,007 - +1.7
557,007 - -0.8
557,007 - +0.7
557,075 + -2.6
557,075 + -1.3
557,076 - +0.8
557,222 + GFF1882 0.21 +1.3
557,223 - GFF1882 0.21 -0.5
557,223 - GFF1882 0.21 -1.4
557,315 + GFF1882 0.30 -1.0
557,315 + GFF1882 0.30 -0.1
557,315 + GFF1882 0.30 -0.4
557,315 + GFF1882 0.30 -3.1
557,315 + GFF1882 0.30 -2.9
557,316 - GFF1882 0.30 +1.3
557,316 - GFF1882 0.30 +2.2
557,316 - GFF1882 0.30 -1.1
557,402 + GFF1882 0.38 -1.6
557,403 - GFF1882 0.38 +0.4
557,403 - GFF1882 0.38 -0.7
557,403 - GFF1882 0.38 -0.4
557,403 - GFF1882 0.38 +1.3
557,426 + GFF1882 0.40 +1.5
557,549 + GFF1882 0.52 -1.0
557,549 + GFF1882 0.52 +0.2
557,549 + GFF1882 0.52 +2.0
557,549 + GFF1882 0.52 -1.4
557,550 - GFF1882 0.52 +0.8
557,690 + GFF1882 0.65 +1.5
557,690 + GFF1882 0.65 -2.1
557,690 + GFF1882 0.65 +2.2
557,690 + GFF1882 0.65 -1.3
557,690 + GFF1882 0.65 +0.5
557,690 + GFF1882 0.65 +0.8
557,691 - GFF1882 0.65 +3.4
557,691 - GFF1882 0.65 -0.6
557,691 - GFF1882 0.65 -1.7
557,691 - GFF1882 0.65 -0.4
557,876 + GFF1882 0.83 -2.1
557,876 + GFF1882 0.83 -0.7
557,876 + GFF1882 0.83 -2.9
557,876 + GFF1882 0.83 -2.7
557,877 - GFF1882 0.83 -0.7
557,877 - GFF1882 0.83 +1.2
557,877 - GFF1882 0.83 +0.9
557,877 - GFF1882 0.83 -0.5
557,877 - GFF1882 0.83 -0.7
557,877 - GFF1882 0.83 +1.0
557,925 - GFF1882 0.88 +1.3
558,874 + GFF1884 0.62 +0.1
558,875 - GFF1884 0.62 -0.1
558,875 - GFF1884 0.62 -0.3

Or see this region's nucleotide sequence