Strain Fitness in Variovorax sp. SCN45 around GFF1767

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1766 and GFF1767 are separated by 7 nucleotidesGFF1767 and GFF1768 are separated by 14 nucleotides GFF1766 - no description, at 428,221 to 429,402 GFF1766 GFF1767 - no description, at 429,410 to 429,694 GFF1767 GFF1768 - FIG00729359: hypothetical protein, at 429,709 to 431,220 GFF1768 Position (kb) 429 430Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 428.630 kb on + strand, within GFF1766at 428.631 kb on - strand, within GFF1766at 428.639 kb on + strand, within GFF1766at 428.639 kb on + strand, within GFF1766at 428.640 kb on - strand, within GFF1766at 428.654 kb on + strand, within GFF1766at 428.655 kb on - strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.880 kb on - strand, within GFF1766at 428.934 kb on - strand, within GFF1766at 429.146 kb on + strand, within GFF1766at 429.147 kb on - strand, within GFF1766at 429.182 kb on + strand, within GFF1766at 429.183 kb on - strand, within GFF1766at 429.411 kb on + strandat 429.411 kb on + strandat 429.411 kb on + strandat 429.411 kb on + strandat 429.411 kb on + strandat 429.412 kb on - strandat 429.519 kb on + strand, within GFF1767at 429.519 kb on + strand, within GFF1767at 429.519 kb on + strand, within GFF1767at 429.519 kb on + strand, within GFF1767at 429.520 kb on - strand, within GFF1767at 429.520 kb on - strand, within GFF1767at 429.520 kb on - strand, within GFF1767at 429.537 kb on + strand, within GFF1767at 429.537 kb on + strand, within GFF1767at 429.538 kb on - strand, within GFF1767at 429.538 kb on - strand, within GFF1767at 429.538 kb on - strand, within GFF1767at 429.598 kb on + strand, within GFF1767at 429.600 kb on + strand, within GFF1767at 429.600 kb on + strand, within GFF1767at 429.600 kb on + strand, within GFF1767at 429.601 kb on - strand, within GFF1767at 429.758 kb on + strandat 430.034 kb on - strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.490 kb on + strand, within GFF1768at 430.491 kb on - strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.640 kb on + strand, within GFF1768at 430.649 kb on + strand, within GFF1768

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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428,630 + GFF1766 0.35 -2.6
428,631 - GFF1766 0.35 +0.0
428,639 + GFF1766 0.35 -2.0
428,639 + GFF1766 0.35 -0.3
428,640 - GFF1766 0.35 +0.2
428,654 + GFF1766 0.37 -2.3
428,655 - GFF1766 0.37 -0.9
428,879 + GFF1766 0.56 +0.6
428,879 + GFF1766 0.56 -2.2
428,879 + GFF1766 0.56 -1.1
428,879 + GFF1766 0.56 -0.2
428,879 + GFF1766 0.56 -2.0
428,879 + GFF1766 0.56 -0.0
428,880 - GFF1766 0.56 -1.7
428,934 - GFF1766 0.60 -0.9
429,146 + GFF1766 0.78 -1.1
429,147 - GFF1766 0.78 +0.2
429,182 + GFF1766 0.81 +1.6
429,183 - GFF1766 0.81 -1.6
429,411 + -1.7
429,411 + +0.5
429,411 + -0.3
429,411 + +0.7
429,411 + -0.1
429,412 - +0.7
429,519 + GFF1767 0.38 +0.5
429,519 + GFF1767 0.38 -0.8
429,519 + GFF1767 0.38 -2.1
429,519 + GFF1767 0.38 -0.6
429,520 - GFF1767 0.39 +0.6
429,520 - GFF1767 0.39 +0.6
429,520 - GFF1767 0.39 +2.2
429,537 + GFF1767 0.45 -1.6
429,537 + GFF1767 0.45 -2.6
429,538 - GFF1767 0.45 -1.7
429,538 - GFF1767 0.45 +1.5
429,538 - GFF1767 0.45 -1.8
429,598 + GFF1767 0.66 +1.8
429,600 + GFF1767 0.67 -0.8
429,600 + GFF1767 0.67 -0.5
429,600 + GFF1767 0.67 -0.7
429,601 - GFF1767 0.67 +1.4
429,758 + +1.9
430,034 - GFF1768 0.21 -0.3
430,187 + GFF1768 0.32 +0.3
430,187 + GFF1768 0.32 -0.5
430,187 + GFF1768 0.32 -0.6
430,187 + GFF1768 0.32 -1.4
430,187 + GFF1768 0.32 +0.1
430,187 + GFF1768 0.32 -2.0
430,187 + GFF1768 0.32 +1.2
430,187 + GFF1768 0.32 -0.6
430,187 + GFF1768 0.32 +0.5
430,187 + GFF1768 0.32 +1.0
430,187 + GFF1768 0.32 +2.2
430,187 + GFF1768 0.32 +0.5
430,187 + GFF1768 0.32 -2.2
430,187 + GFF1768 0.32 -4.3
430,187 + GFF1768 0.32 -2.9
430,187 + GFF1768 0.32 -0.6
430,187 + GFF1768 0.32 +0.8
430,188 - GFF1768 0.32 -0.5
430,188 - GFF1768 0.32 -0.2
430,188 - GFF1768 0.32 +1.1
430,188 - GFF1768 0.32 -0.3
430,188 - GFF1768 0.32 +0.2
430,188 - GFF1768 0.32 +1.0
430,490 + GFF1768 0.52 -2.1
430,491 - GFF1768 0.52 -1.9
430,622 + GFF1768 0.60 -0.6
430,622 + GFF1768 0.60 -1.1
430,622 + GFF1768 0.60 -0.3
430,622 + GFF1768 0.60 -2.7
430,622 + GFF1768 0.60 +0.7
430,622 + GFF1768 0.60 -1.9
430,622 + GFF1768 0.60 -2.0
430,622 + GFF1768 0.60 -1.9
430,623 - GFF1768 0.60 +3.7
430,623 - GFF1768 0.60 -2.7
430,623 - GFF1768 0.60 +2.3
430,623 - GFF1768 0.60 -0.1
430,623 - GFF1768 0.60 +0.4
430,640 + GFF1768 0.62 -0.6
430,649 + GFF1768 0.62 -0.4

Or see this region's nucleotide sequence