Strain Fitness in Variovorax sp. SCN45 around GFF1761

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1760 and GFF1761 overlap by 4 nucleotidesGFF1761 and GFF1762 are separated by 8 nucleotides GFF1760 - Probable transmembrane protein, at 421,962 to 423,167 GFF1760 GFF1761 - Putative hemolysin, at 423,164 to 424,021 GFF1761 GFF1762 - no description, at 424,030 to 425,124 GFF1762 Position (kb) 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 422.668 kb on + strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.836 kb on + strand, within GFF1760at 422.837 kb on - strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.998 kb on + strand, within GFF1760at 422.998 kb on + strand, within GFF1760at 422.999 kb on - strand, within GFF1760at 423.256 kb on + strand, within GFF1761at 423.256 kb on + strand, within GFF1761at 423.312 kb on + strand, within GFF1761at 423.312 kb on + strand, within GFF1761at 423.312 kb on + strand, within GFF1761at 423.313 kb on - strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.673 kb on - strand, within GFF1761at 423.717 kb on + strand, within GFF1761at 423.717 kb on + strand, within GFF1761at 423.718 kb on - strand, within GFF1761at 423.718 kb on - strand, within GFF1761at 423.718 kb on - strand, within GFF1761at 424.577 kb on + strand, within GFF1762at 424.577 kb on + strand, within GFF1762at 424.578 kb on - strand, within GFF1762at 424.578 kb on - strand, within GFF1762at 424.631 kb on + strand, within GFF1762at 424.631 kb on + strand, within GFF1762at 424.664 kb on + strand, within GFF1762at 424.665 kb on - strand, within GFF1762at 424.709 kb on + strand, within GFF1762at 424.709 kb on + strand, within GFF1762at 424.709 kb on + strand, within GFF1762at 424.710 kb on - strand, within GFF1762at 424.910 kb on + strand, within GFF1762

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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422,668 + GFF1760 0.59 -2.1
422,668 + GFF1760 0.59 -2.2
422,668 + GFF1760 0.59 -0.1
422,669 - GFF1760 0.59 -2.1
422,669 - GFF1760 0.59 -0.4
422,669 - GFF1760 0.59 -2.6
422,821 + GFF1760 0.71 +0.5
422,821 + GFF1760 0.71 +0.1
422,821 + GFF1760 0.71 -2.5
422,821 + GFF1760 0.71 +0.5
422,821 + GFF1760 0.71 -2.0
422,822 - GFF1760 0.71 -2.2
422,822 - GFF1760 0.71 -0.8
422,822 - GFF1760 0.71 -0.2
422,836 + GFF1760 0.72 -0.4
422,837 - GFF1760 0.73 +0.6
422,866 + GFF1760 0.75 -2.9
422,866 + GFF1760 0.75 +1.9
422,866 + GFF1760 0.75 -0.8
422,998 + GFF1760 0.86 +0.5
422,998 + GFF1760 0.86 +0.6
422,999 - GFF1760 0.86 +0.4
423,256 + GFF1761 0.11 -1.6
423,256 + GFF1761 0.11 +1.4
423,312 + GFF1761 0.17 +0.6
423,312 + GFF1761 0.17 +0.3
423,312 + GFF1761 0.17 +1.2
423,313 - GFF1761 0.17 -0.6
423,537 + GFF1761 0.43 -3.1
423,537 + GFF1761 0.43 +0.4
423,537 + GFF1761 0.43 +0.4
423,537 + GFF1761 0.43 -0.9
423,537 + GFF1761 0.43 +0.6
423,537 + GFF1761 0.43 -3.5
423,537 + GFF1761 0.43 -1.1
423,537 + GFF1761 0.43 +0.0
423,537 + GFF1761 0.43 +0.1
423,537 + GFF1761 0.43 +1.1
423,537 + GFF1761 0.43 +0.2
423,537 + GFF1761 0.43 -0.6
423,538 - GFF1761 0.44 -2.4
423,538 - GFF1761 0.44 +0.1
423,538 - GFF1761 0.44 +1.8
423,538 - GFF1761 0.44 -1.4
423,538 - GFF1761 0.44 -0.4
423,538 - GFF1761 0.44 +0.4
423,538 - GFF1761 0.44 +1.2
423,538 - GFF1761 0.44 -1.9
423,538 - GFF1761 0.44 -1.0
423,538 - GFF1761 0.44 +2.0
423,673 - GFF1761 0.59 -0.4
423,717 + GFF1761 0.64 +1.1
423,717 + GFF1761 0.64 -0.2
423,718 - GFF1761 0.65 -1.3
423,718 - GFF1761 0.65 +1.4
423,718 - GFF1761 0.65 +0.8
424,577 + GFF1762 0.50 -0.6
424,577 + GFF1762 0.50 -1.4
424,578 - GFF1762 0.50 -2.0
424,578 - GFF1762 0.50 -0.5
424,631 + GFF1762 0.55 -1.1
424,631 + GFF1762 0.55 +1.8
424,664 + GFF1762 0.58 -1.4
424,665 - GFF1762 0.58 -0.3
424,709 + GFF1762 0.62 -3.3
424,709 + GFF1762 0.62 -0.4
424,709 + GFF1762 0.62 +0.1
424,710 - GFF1762 0.62 -2.3
424,910 + GFF1762 0.80 +0.0

Or see this region's nucleotide sequence