Strain Fitness in Variovorax sp. SCN45 around GFF1760

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1759 and GFF1760 are separated by 39 nucleotidesGFF1760 and GFF1761 overlap by 4 nucleotidesGFF1761 and GFF1762 are separated by 8 nucleotides GFF1759 - PQQ-dependent oxidoreductase, gdhB family, at 420,696 to 421,922 GFF1759 GFF1760 - Probable transmembrane protein, at 421,962 to 423,167 GFF1760 GFF1761 - Putative hemolysin, at 423,164 to 424,021 GFF1761 GFF1762 - no description, at 424,030 to 425,124 GFF1762 Position (kb) 421 422 423 424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 421.015 kb on + strand, within GFF1759at 421.016 kb on - strand, within GFF1759at 421.027 kb on + strand, within GFF1759at 421.028 kb on - strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.208 kb on - strand, within GFF1759at 421.208 kb on - strand, within GFF1759at 421.588 kb on + strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.597 kb on + strand, within GFF1759at 421.597 kb on + strand, within GFF1759at 421.598 kb on - strand, within GFF1759at 421.598 kb on - strand, within GFF1759at 421.598 kb on - strand, within GFF1759at 421.633 kb on + strand, within GFF1759at 421.633 kb on + strand, within GFF1759at 421.633 kb on + strand, within GFF1759at 421.634 kb on - strand, within GFF1759at 421.663 kb on + strand, within GFF1759at 421.664 kb on - strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.955 kb on + strandat 421.964 kb on - strandat 421.964 kb on - strandat 422.107 kb on + strand, within GFF1760at 422.107 kb on + strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.836 kb on + strand, within GFF1760at 422.837 kb on - strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.998 kb on + strand, within GFF1760at 422.998 kb on + strand, within GFF1760at 422.999 kb on - strand, within GFF1760at 423.256 kb on + strand, within GFF1761at 423.256 kb on + strand, within GFF1761at 423.312 kb on + strand, within GFF1761at 423.312 kb on + strand, within GFF1761at 423.312 kb on + strand, within GFF1761at 423.313 kb on - strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.537 kb on + strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.538 kb on - strand, within GFF1761at 423.673 kb on - strand, within GFF1761at 423.717 kb on + strand, within GFF1761at 423.717 kb on + strand, within GFF1761at 423.718 kb on - strand, within GFF1761at 423.718 kb on - strand, within GFF1761at 423.718 kb on - strand, within GFF1761

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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421,015 + GFF1759 0.26 +0.3
421,016 - GFF1759 0.26 -2.7
421,027 + GFF1759 0.27 -3.8
421,028 - GFF1759 0.27 +1.3
421,048 + GFF1759 0.29 -2.4
421,048 + GFF1759 0.29 +0.5
421,048 + GFF1759 0.29 +1.6
421,048 + GFF1759 0.29 -0.0
421,049 - GFF1759 0.29 -2.6
421,049 - GFF1759 0.29 -2.5
421,049 - GFF1759 0.29 -1.0
421,049 - GFF1759 0.29 +0.0
421,207 + GFF1759 0.42 -0.3
421,207 + GFF1759 0.42 +1.1
421,207 + GFF1759 0.42 +1.1
421,207 + GFF1759 0.42 +3.8
421,207 + GFF1759 0.42 -0.2
421,208 - GFF1759 0.42 -1.1
421,208 - GFF1759 0.42 -1.3
421,588 + GFF1759 0.73 -2.7
421,589 - GFF1759 0.73 +0.9
421,589 - GFF1759 0.73 +0.5
421,589 - GFF1759 0.73 -0.9
421,589 - GFF1759 0.73 -2.4
421,597 + GFF1759 0.73 +1.2
421,597 + GFF1759 0.73 -1.5
421,598 - GFF1759 0.74 +2.6
421,598 - GFF1759 0.74 -1.8
421,598 - GFF1759 0.74 -0.1
421,633 + GFF1759 0.76 -1.4
421,633 + GFF1759 0.76 -1.4
421,633 + GFF1759 0.76 -0.9
421,634 - GFF1759 0.76 -0.4
421,663 + GFF1759 0.79 +1.2
421,664 - GFF1759 0.79 -1.4
421,720 + GFF1759 0.83 -1.8
421,720 + GFF1759 0.83 +0.8
421,720 + GFF1759 0.83 +0.7
421,720 + GFF1759 0.83 -0.0
421,720 + GFF1759 0.83 +0.6
421,720 + GFF1759 0.83 +0.2
421,720 + GFF1759 0.83 +0.0
421,721 - GFF1759 0.84 +0.3
421,721 - GFF1759 0.84 -1.3
421,721 - GFF1759 0.84 -0.8
421,721 - GFF1759 0.84 -1.3
421,955 + -0.3
421,964 - -0.2
421,964 - -2.9
422,107 + GFF1760 0.12 +1.6
422,107 + GFF1760 0.12 -0.4
422,108 - GFF1760 0.12 -2.4
422,108 - GFF1760 0.12 -1.5
422,108 - GFF1760 0.12 -2.0
422,108 - GFF1760 0.12 -0.5
422,668 + GFF1760 0.59 -2.1
422,668 + GFF1760 0.59 -2.2
422,668 + GFF1760 0.59 -0.1
422,669 - GFF1760 0.59 -2.1
422,669 - GFF1760 0.59 -0.4
422,669 - GFF1760 0.59 -2.6
422,821 + GFF1760 0.71 +0.5
422,821 + GFF1760 0.71 +0.1
422,821 + GFF1760 0.71 -2.5
422,821 + GFF1760 0.71 +0.5
422,821 + GFF1760 0.71 -2.0
422,822 - GFF1760 0.71 -2.2
422,822 - GFF1760 0.71 -0.8
422,822 - GFF1760 0.71 -0.2
422,836 + GFF1760 0.72 -0.4
422,837 - GFF1760 0.73 +0.6
422,866 + GFF1760 0.75 -2.9
422,866 + GFF1760 0.75 +1.9
422,866 + GFF1760 0.75 -0.8
422,998 + GFF1760 0.86 +0.5
422,998 + GFF1760 0.86 +0.6
422,999 - GFF1760 0.86 +0.4
423,256 + GFF1761 0.11 -1.6
423,256 + GFF1761 0.11 +1.4
423,312 + GFF1761 0.17 +0.6
423,312 + GFF1761 0.17 +0.3
423,312 + GFF1761 0.17 +1.2
423,313 - GFF1761 0.17 -0.6
423,537 + GFF1761 0.43 -3.1
423,537 + GFF1761 0.43 +0.4
423,537 + GFF1761 0.43 +0.4
423,537 + GFF1761 0.43 -0.9
423,537 + GFF1761 0.43 +0.6
423,537 + GFF1761 0.43 -3.5
423,537 + GFF1761 0.43 -1.1
423,537 + GFF1761 0.43 +0.0
423,537 + GFF1761 0.43 +0.1
423,537 + GFF1761 0.43 +1.1
423,537 + GFF1761 0.43 +0.2
423,537 + GFF1761 0.43 -0.6
423,538 - GFF1761 0.44 -2.4
423,538 - GFF1761 0.44 +0.1
423,538 - GFF1761 0.44 +1.8
423,538 - GFF1761 0.44 -1.4
423,538 - GFF1761 0.44 -0.4
423,538 - GFF1761 0.44 +0.4
423,538 - GFF1761 0.44 +1.2
423,538 - GFF1761 0.44 -1.9
423,538 - GFF1761 0.44 -1.0
423,538 - GFF1761 0.44 +2.0
423,673 - GFF1761 0.59 -0.4
423,717 + GFF1761 0.64 +1.1
423,717 + GFF1761 0.64 -0.2
423,718 - GFF1761 0.65 -1.3
423,718 - GFF1761 0.65 +1.4
423,718 - GFF1761 0.65 +0.8

Or see this region's nucleotide sequence