Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1636 and GFF1637 are separated by 84 nucleotides GFF1637 and GFF1638 overlap by 4 nucleotides
GFF1636 - Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 256,850 to 260,152
GFF1636
GFF1637 - Polyketide synthase modules and related proteins, at 260,237 to 264,835
GFF1637
GFF1638 - Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 264,832 to 268,113
GFF1638
Position (kb) 260
261
262
263
264
265 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 259.270 kb on + strand, within GFF1636 at 259.350 kb on + strand, within GFF1636 at 259.603 kb on + strand, within GFF1636 at 259.603 kb on + strand, within GFF1636 at 259.604 kb on - strand, within GFF1636 at 259.865 kb on + strand at 259.866 kb on - strand at 259.941 kb on + strand at 259.942 kb on - strand at 260.220 kb on - strand at 260.845 kb on - strand, within GFF1637 at 261.709 kb on - strand, within GFF1637 at 261.807 kb on + strand, within GFF1637 at 261.808 kb on - strand, within GFF1637 at 261.808 kb on - strand, within GFF1637 at 261.891 kb on + strand, within GFF1637 at 262.017 kb on + strand, within GFF1637 at 262.170 kb on + strand, within GFF1637 at 262.171 kb on - strand, within GFF1637 at 262.171 kb on - strand, within GFF1637 at 262.191 kb on + strand, within GFF1637 at 262.233 kb on + strand, within GFF1637 at 262.253 kb on + strand, within GFF1637 at 262.495 kb on - strand, within GFF1637 at 262.917 kb on + strand, within GFF1637 at 262.917 kb on + strand, within GFF1637 at 263.163 kb on + strand, within GFF1637 at 263.243 kb on + strand, within GFF1637 at 263.243 kb on + strand, within GFF1637 at 263.243 kb on + strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.283 kb on + strand, within GFF1637 at 263.283 kb on + strand, within GFF1637 at 263.283 kb on + strand, within GFF1637 at 263.284 kb on - strand, within GFF1637 at 263.495 kb on + strand, within GFF1637 at 263.496 kb on - strand, within GFF1637 at 263.661 kb on + strand, within GFF1637 at 263.878 kb on - strand, within GFF1637 at 264.319 kb on - strand, within GFF1637 at 264.432 kb on + strand at 264.456 kb on + strand at 264.556 kb on - strand at 265.143 kb on + strand at 265.346 kb on + strand, within GFF1638 at 265.643 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.799 kb on + strand, within GFF1638 at 265.808 kb on + strand, within GFF1638 at 265.809 kb on - strand, within GFF1638
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 259,270 + GFF1636 0.73 -2.2 259,350 + GFF1636 0.76 -0.4 259,603 + GFF1636 0.83 +0.8 259,603 + GFF1636 0.83 +0.4 259,604 - GFF1636 0.83 -0.2 259,865 + -1.8 259,866 - -0.9 259,941 + -2.0 259,942 - +0.3 260,220 - -1.9 260,845 - GFF1637 0.13 -1.0 261,709 - GFF1637 0.32 -1.6 261,807 + GFF1637 0.34 -1.2 261,808 - GFF1637 0.34 -1.4 261,808 - GFF1637 0.34 -0.0 261,891 + GFF1637 0.36 +1.2 262,017 + GFF1637 0.39 -3.8 262,170 + GFF1637 0.42 -0.2 262,171 - GFF1637 0.42 -0.4 262,171 - GFF1637 0.42 +2.2 262,191 + GFF1637 0.42 -2.5 262,233 + GFF1637 0.43 +2.1 262,253 + GFF1637 0.44 +0.4 262,495 - GFF1637 0.49 -0.0 262,917 + GFF1637 0.58 +3.0 262,917 + GFF1637 0.58 -0.4 263,163 + GFF1637 0.64 +0.7 263,243 + GFF1637 0.65 +1.7 263,243 + GFF1637 0.65 -2.3 263,243 + GFF1637 0.65 -3.3 263,244 - GFF1637 0.65 -1.7 263,244 - GFF1637 0.65 -1.9 263,244 - GFF1637 0.65 -1.3 263,244 - GFF1637 0.65 -0.4 263,244 - GFF1637 0.65 +1.4 263,244 - GFF1637 0.65 +0.5 263,283 + GFF1637 0.66 +1.8 263,283 + GFF1637 0.66 +2.2 263,283 + GFF1637 0.66 -0.8 263,284 - GFF1637 0.66 -0.4 263,495 + GFF1637 0.71 -1.1 263,496 - GFF1637 0.71 -1.9 263,661 + GFF1637 0.74 +0.6 263,878 - GFF1637 0.79 -1.9 264,319 - GFF1637 0.89 -0.8 264,432 + -1.3 264,456 + +1.0 264,556 - +0.2 265,143 + -1.9 265,346 + GFF1638 0.16 -0.9 265,643 + GFF1638 0.25 -4.0 265,697 + GFF1638 0.26 -1.1 265,697 + GFF1638 0.26 +1.6 265,697 + GFF1638 0.26 -1.0 265,698 - GFF1638 0.26 +0.9 265,698 - GFF1638 0.26 -3.3 265,698 - GFF1638 0.26 +0.1 265,698 - GFF1638 0.26 +2.1 265,799 + GFF1638 0.29 +0.6 265,808 + GFF1638 0.30 -2.5 265,809 - GFF1638 0.30 -2.7
Or see this region's nucleotide sequence