Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1616 and GFF1617 are separated by 15 nucleotides GFF1617 and GFF1618 are separated by 99 nucleotides GFF1618 and GFF1619 are separated by 25 nucleotides GFF1619 and GFF1620 are separated by 13 nucleotides
GFF1616 - Phosphonate uptake and metabolism regulator, LysR-family, at 213,778 to 214,665
GFF1616
GFF1617 - Phosphonate uptake and metabolism regulator, LysR-family, at 214,681 to 215,553
GFF1617
GFF1618 - Phospholipase C (EC 3.1.4.3), at 215,653 to 217,803
GFF1618
GFF1619 - no description, at 217,829 to 218,071
GFF1619
GFF1620 - Large exoproteins involved in heme utilization or adhesion, at 218,085 to 220,358
GFF1620
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 214.829 kb on + strand, within GFF1617 at 214.829 kb on + strand, within GFF1617 at 214.829 kb on + strand, within GFF1617 at 215.084 kb on + strand, within GFF1617 at 215.084 kb on + strand, within GFF1617 at 215.085 kb on - strand, within GFF1617 at 215.147 kb on + strand, within GFF1617 at 215.148 kb on - strand, within GFF1617 at 215.225 kb on + strand, within GFF1617 at 215.409 kb on - strand, within GFF1617 at 215.446 kb on + strand, within GFF1617 at 215.446 kb on + strand, within GFF1617 at 215.446 kb on + strand, within GFF1617 at 215.447 kb on - strand, within GFF1617 at 215.447 kb on - strand, within GFF1617 at 215.447 kb on - strand, within GFF1617 at 215.536 kb on + strand at 215.537 kb on - strand at 215.537 kb on - strand at 215.629 kb on + strand at 215.629 kb on + strand at 215.629 kb on + strand at 215.630 kb on - strand at 215.825 kb on + strand at 215.826 kb on - strand at 215.933 kb on + strand, within GFF1618 at 216.134 kb on + strand, within GFF1618 at 216.134 kb on + strand, within GFF1618 at 216.135 kb on - strand, within GFF1618 at 216.333 kb on - strand, within GFF1618 at 216.645 kb on - strand, within GFF1618 at 216.645 kb on - strand, within GFF1618 at 216.645 kb on - strand, within GFF1618 at 216.683 kb on + strand, within GFF1618 at 217.122 kb on - strand, within GFF1618 at 217.314 kb on - strand, within GFF1618 at 217.379 kb on + strand, within GFF1618 at 218.194 kb on + strand at 218.194 kb on + strand at 218.195 kb on - strand at 218.198 kb on + strand at 218.198 kb on + strand at 218.199 kb on - strand at 218.199 kb on - strand at 218.392 kb on + strand, within GFF1620 at 218.392 kb on + strand, within GFF1620 at 218.392 kb on + strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.513 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 214,829 + GFF1617 0.17 +0.0 214,829 + GFF1617 0.17 -1.4 214,829 + GFF1617 0.17 -1.1 215,084 + GFF1617 0.46 -2.5 215,084 + GFF1617 0.46 -1.5 215,085 - GFF1617 0.46 -1.0 215,147 + GFF1617 0.53 -0.4 215,148 - GFF1617 0.53 -0.8 215,225 + GFF1617 0.62 -2.2 215,409 - GFF1617 0.83 +1.1 215,446 + GFF1617 0.88 -2.2 215,446 + GFF1617 0.88 +0.3 215,446 + GFF1617 0.88 -0.2 215,447 - GFF1617 0.88 -1.8 215,447 - GFF1617 0.88 -0.7 215,447 - GFF1617 0.88 -1.2 215,536 + -2.2 215,537 - -2.9 215,537 - +0.8 215,629 + -1.0 215,629 + +1.0 215,629 + -0.9 215,630 - -1.2 215,825 + +0.1 215,826 - -1.1 215,933 + GFF1618 0.13 +1.6 216,134 + GFF1618 0.22 -0.5 216,134 + GFF1618 0.22 -0.6 216,135 - GFF1618 0.22 -2.7 216,333 - GFF1618 0.32 +0.6 216,645 - GFF1618 0.46 -0.8 216,645 - GFF1618 0.46 +1.3 216,645 - GFF1618 0.46 +0.8 216,683 + GFF1618 0.48 -0.3 217,122 - GFF1618 0.68 -3.2 217,314 - GFF1618 0.77 -3.6 217,379 + GFF1618 0.80 -1.2 218,194 + +1.2 218,194 + -0.4 218,195 - +1.0 218,198 + -1.1 218,198 + +0.7 218,199 - +3.5 218,199 - -1.2 218,392 + GFF1620 0.14 +0.2 218,392 + GFF1620 0.14 -1.3 218,392 + GFF1620 0.14 +0.9 218,393 - GFF1620 0.14 -0.4 218,393 - GFF1620 0.14 -2.0 218,393 - GFF1620 0.14 +0.6 218,393 - GFF1620 0.14 -1.2 218,393 - GFF1620 0.14 +1.3 218,393 - GFF1620 0.14 +1.7 218,393 - GFF1620 0.14 -1.7 218,393 - GFF1620 0.14 +1.8 218,393 - GFF1620 0.14 -2.4 218,393 - GFF1620 0.14 +0.6 218,513 + GFF1620 0.19 +0.7 218,590 + GFF1620 0.22 -0.2 218,590 + GFF1620 0.22 -2.2 218,590 + GFF1620 0.22 -1.3 218,590 + GFF1620 0.22 -1.7 218,591 - GFF1620 0.22 +2.2 218,591 - GFF1620 0.22 -1.9 218,591 - GFF1620 0.22 -0.1 218,591 - GFF1620 0.22 +4.0 218,591 - GFF1620 0.22 -2.1 218,591 - GFF1620 0.22 +0.5 218,591 - GFF1620 0.22 -0.7
Or see this region's nucleotide sequence