Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1558 and GFF1559 are separated by 9 nucleotides GFF1559 and GFF1560 are separated by 186 nucleotides GFF1560 and GFF1561 are separated by 42 nucleotides
GFF1558 - Uncharacterized ATP-dependent DNA helicase PA3272, at 156,614 to 160,987
GFF1558
GFF1559 - Mg(2+)-transport-ATPase-associated protein MgtC, at 160,997 to 161,716
GFF1559
GFF1560 - hypothetical protein, at 161,903 to 162,370
GFF1560
GFF1561 - Aldehyde dehydrogenase (EC 1.2.1.3), at 162,413 to 163,849
GFF1561
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.337 kb on + strand, within GFF1558 at 160.337 kb on + strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 161.277 kb on + strand, within GFF1559 at 161.349 kb on + strand, within GFF1559 at 161.775 kb on + strand at 161.775 kb on + strand at 161.776 kb on - strand at 161.814 kb on + strand at 161.815 kb on - strand at 161.855 kb on + strand at 161.856 kb on - strand at 161.884 kb on + strand at 161.885 kb on - strand at 161.885 kb on - strand at 162.213 kb on + strand, within GFF1560 at 162.463 kb on - strand at 162.639 kb on + strand, within GFF1561 at 162.685 kb on - strand, within GFF1561
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 160,337 + GFF1558 0.85 -1.2 160,337 + GFF1558 0.85 +1.9 160,338 - GFF1558 0.85 -1.3 160,338 - GFF1558 0.85 -2.0 161,277 + GFF1559 0.39 -0.9 161,349 + GFF1559 0.49 -0.9 161,775 + -0.9 161,775 + -2.3 161,776 - +0.1 161,814 + -1.5 161,815 - +0.1 161,855 + -0.2 161,856 - -0.9 161,884 + -2.0 161,885 - +1.7 161,885 - -2.3 162,213 + GFF1560 0.66 -1.3 162,463 - -0.9 162,639 + GFF1561 0.16 +0.7 162,685 - GFF1561 0.19 -0.3
Or see this region's nucleotide sequence