Strain Fitness in Variovorax sp. SCN45 around GFF1559

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1558 and GFF1559 are separated by 9 nucleotidesGFF1559 and GFF1560 are separated by 186 nucleotidesGFF1560 and GFF1561 are separated by 42 nucleotides GFF1558 - Uncharacterized ATP-dependent DNA helicase PA3272, at 156,614 to 160,987 GFF1558 GFF1559 - Mg(2+)-transport-ATPase-associated protein MgtC, at 160,997 to 161,716 GFF1559 GFF1560 - hypothetical protein, at 161,903 to 162,370 GFF1560 GFF1561 - Aldehyde dehydrogenase (EC 1.2.1.3), at 162,413 to 163,849 GFF1561 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1 2at 160.337 kb on + strand, within GFF1558at 160.337 kb on + strand, within GFF1558at 160.338 kb on - strand, within GFF1558at 160.338 kb on - strand, within GFF1558at 161.277 kb on + strand, within GFF1559at 161.349 kb on + strand, within GFF1559at 161.775 kb on + strandat 161.775 kb on + strandat 161.776 kb on - strandat 161.814 kb on + strandat 161.815 kb on - strandat 161.855 kb on + strandat 161.856 kb on - strandat 161.884 kb on + strandat 161.885 kb on - strandat 161.885 kb on - strandat 162.213 kb on + strand, within GFF1560at 162.463 kb on - strandat 162.639 kb on + strand, within GFF1561at 162.685 kb on - strand, within GFF1561

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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160,337 + GFF1558 0.85 -1.2
160,337 + GFF1558 0.85 +1.9
160,338 - GFF1558 0.85 -1.3
160,338 - GFF1558 0.85 -2.0
161,277 + GFF1559 0.39 -0.9
161,349 + GFF1559 0.49 -0.9
161,775 + -0.9
161,775 + -2.3
161,776 - +0.1
161,814 + -1.5
161,815 - +0.1
161,855 + -0.2
161,856 - -0.9
161,884 + -2.0
161,885 - +1.7
161,885 - -2.3
162,213 + GFF1560 0.66 -1.3
162,463 - -0.9
162,639 + GFF1561 0.16 +0.7
162,685 - GFF1561 0.19 -0.3

Or see this region's nucleotide sequence