Strain Fitness in Variovorax sp. SCN45 around GFF1525

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
120,517	+				+0.2
120,517	+				-0.3
120,517	+				-2.0
120,518	-				-2.0
120,518	-				-0.5
120,518	-				-0.6
120,518	-				+0.7
120,518	-				-2.6
120,544	+		GFF1524	0.10	-2.0
120,545	-		GFF1524	0.10	+0.5
120,545	-		GFF1524	0.10	-0.5
120,754	+		GFF1524	0.51	-1.3
120,755	-		GFF1524	0.51	-1.6
120,961	+				-1.6
120,961	+				-3.5
120,962	-				-0.3
121,038	+				+2.1
121,038	+				-2.0
121,077	+				+2.1
121,077	+				+0.2
121,077	+				-1.0
121,077	+				+0.3
121,077	+				+1.4
121,078	-				-0.6
121,078	-				-2.0
121,078	-				+1.3
121,078	-				-0.9
121,078	-				-3.3
121,078	-				-3.1
121,166	+				-0.9
121,166	+				+0.6
121,244	+		GFF1525	0.15	-3.3
121,244	+		GFF1525	0.15	+1.8
121,244	+		GFF1525	0.15	+0.4
121,244	+		GFF1525	0.15	-1.4
121,244	+		GFF1525	0.15	-0.7
121,244	+		GFF1525	0.15	-1.6
121,244	+		GFF1525	0.15	-4.3
121,244	+		GFF1525	0.15	+0.9
121,244	+		GFF1525	0.15	-1.0
121,245	-		GFF1525	0.15	+0.3
121,245	-		GFF1525	0.15	-1.8
121,245	-		GFF1525	0.15	-3.2
121,245	-		GFF1525	0.15	-0.7
121,245	-		GFF1525	0.15	-2.7
121,245	-		GFF1525	0.15	-0.5
121,245	-		GFF1525	0.15	-0.5
121,245	-		GFF1525	0.15	-0.7
121,245	-		GFF1525	0.15	-2.5
121,245	-		GFF1525	0.15	-0.5
121,245	-		GFF1525	0.15	+0.0
121,245	-		GFF1525	0.15	-2.2
121,245	-		GFF1525	0.15	-1.2
121,308	-		GFF1525	0.26	-1.9
121,528	+		GFF1525	0.63	-4.0
121,528	+		GFF1525	0.63	+1.6
121,528	+		GFF1525	0.63	-2.0
121,528	+		GFF1525	0.63	-0.2
121,528	+		GFF1525	0.63	+0.2
121,529	-		GFF1525	0.63	+1.1
121,529	-		GFF1525	0.63	-0.3
121,529	-		GFF1525	0.63	+2.1
121,757	-				-1.0
121,775	+				+1.0
121,977	+		GFF1526	0.13	-0.9
121,978	-		GFF1526	0.13	+1.1
122,061	+		GFF1526	0.20	-0.0
122,286	+		GFF1526	0.39	-2.0
122,286	+		GFF1526	0.39	-0.2
122,286	+		GFF1526	0.39	-2.6
122,287	-		GFF1526	0.39	-0.9
122,287	-		GFF1526	0.39	+1.1
122,287	-		GFF1526	0.39	-1.3
122,287	-		GFF1526	0.39	+1.0
122,287	-		GFF1526	0.39	-2.2
122,287	-		GFF1526	0.39	-1.3
122,287	-		GFF1526	0.39	-0.1
122,391	+		GFF1526	0.48	+0.6
122,391	+		GFF1526	0.48	-0.1
122,391	+		GFF1526	0.48	-1.6
122,392	-		GFF1526	0.48	+0.4
122,392	-		GFF1526	0.48	-0.7
122,392	-		GFF1526	0.48	+1.0
122,392	-		GFF1526	0.48	+0.0
122,392	-		GFF1526	0.48	-2.5
122,527	-		GFF1526	0.60	+1.0
122,527	-		GFF1526	0.60	+0.5
122,527	-		GFF1526	0.60	-0.8
122,527	-		GFF1526	0.60	-0.2
122,600	-		GFF1526	0.66	+0.4