Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1485 and GFF1486 are separated by 159 nucleotides GFF1486 and GFF1487 overlap by 4 nucleotides GFF1487 and GFF1488 are separated by 39 nucleotides
GFF1485 - Transcriptional regulator, AraC family, at 77,628 to 78,449
GFF1485
GFF1486 - Tetrapartite efflux system, inner membrane component FusBC-like, at 78,609 to 80,672
GFF1486
GFF1487 - Tetrapartite efflux system component, FusD-like, at 80,669 to 80,875
GFF1487
GFF1488 - Tetrapartite efflux system, membrane fusion component FusE-like, at 80,915 to 81,913
GFF1488
Position (kb) 78
79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.684 kb on + strand at 77.684 kb on + strand at 77.684 kb on + strand at 77.686 kb on + strand at 77.686 kb on + strand at 77.687 kb on - strand at 77.687 kb on - strand at 77.961 kb on + strand, within GFF1485 at 78.076 kb on + strand, within GFF1485 at 78.077 kb on - strand, within GFF1485 at 78.187 kb on + strand, within GFF1485 at 78.188 kb on - strand, within GFF1485 at 78.332 kb on + strand, within GFF1485 at 78.597 kb on + strand at 78.597 kb on + strand at 78.598 kb on - strand at 78.684 kb on + strand at 78.684 kb on + strand at 78.684 kb on + strand at 78.685 kb on - strand at 78.685 kb on - strand at 78.685 kb on - strand at 78.738 kb on + strand at 78.738 kb on + strand at 78.738 kb on + strand at 78.739 kb on - strand at 78.739 kb on - strand at 78.903 kb on + strand, within GFF1486 at 78.904 kb on - strand, within GFF1486 at 78.936 kb on + strand, within GFF1486 at 78.936 kb on + strand, within GFF1486 at 78.937 kb on - strand, within GFF1486 at 78.937 kb on - strand, within GFF1486 at 78.937 kb on - strand, within GFF1486 at 79.726 kb on + strand, within GFF1486 at 79.726 kb on + strand, within GFF1486 at 79.726 kb on + strand, within GFF1486 at 79.727 kb on - strand, within GFF1486 at 80.013 kb on + strand, within GFF1486 at 80.013 kb on + strand, within GFF1486 at 80.013 kb on + strand, within GFF1486 at 80.215 kb on + strand, within GFF1486 at 80.215 kb on + strand, within GFF1486 at 80.216 kb on - strand, within GFF1486 at 80.216 kb on - strand, within GFF1486 at 80.287 kb on - strand, within GFF1486 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.697 kb on - strand, within GFF1487 at 80.697 kb on - strand, within GFF1487 at 80.822 kb on + strand, within GFF1487 at 80.822 kb on + strand, within GFF1487 at 81.510 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 77,684 + -2.7 77,684 + -2.0 77,684 + -0.1 77,686 + -2.9 77,686 + +0.6 77,687 - -0.7 77,687 - -0.1 77,961 + GFF1485 0.41 -2.0 78,076 + GFF1485 0.55 -0.3 78,077 - GFF1485 0.55 -0.8 78,187 + GFF1485 0.68 -2.0 78,188 - GFF1485 0.68 +0.8 78,332 + GFF1485 0.86 -2.3 78,597 + -1.7 78,597 + +0.3 78,598 - +1.4 78,684 + +0.0 78,684 + -1.8 78,684 + -1.0 78,685 - -1.2 78,685 - +2.1 78,685 - -0.6 78,738 + +0.1 78,738 + +0.1 78,738 + -2.8 78,739 - -1.6 78,739 - -1.2 78,903 + GFF1486 0.14 +1.0 78,904 - GFF1486 0.14 -2.0 78,936 + GFF1486 0.16 +0.2 78,936 + GFF1486 0.16 -1.0 78,937 - GFF1486 0.16 -0.7 78,937 - GFF1486 0.16 -0.7 78,937 - GFF1486 0.16 -1.5 79,726 + GFF1486 0.54 -1.6 79,726 + GFF1486 0.54 +0.0 79,726 + GFF1486 0.54 +0.1 79,727 - GFF1486 0.54 -0.1 80,013 + GFF1486 0.68 -1.2 80,013 + GFF1486 0.68 -0.3 80,013 + GFF1486 0.68 -3.6 80,215 + GFF1486 0.78 -1.3 80,215 + GFF1486 0.78 +0.5 80,216 - GFF1486 0.78 -0.6 80,216 - GFF1486 0.78 -1.5 80,287 - GFF1486 0.81 -0.9 80,696 + GFF1487 0.13 -0.9 80,696 + GFF1487 0.13 -0.7 80,696 + GFF1487 0.13 +0.5 80,696 + GFF1487 0.13 +0.8 80,696 + GFF1487 0.13 +1.1 80,696 + GFF1487 0.13 -0.9 80,697 - GFF1487 0.14 -0.0 80,697 - GFF1487 0.14 +1.1 80,822 + GFF1487 0.74 +0.4 80,822 + GFF1487 0.74 -0.9 81,510 - GFF1488 0.60 -2.5 81,561 - GFF1488 0.65 -1.3 81,561 - GFF1488 0.65 +0.7
Or see this region's nucleotide sequence