Strain Fitness in Variovorax sp. SCN45 around GFF1449

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
39,863	+		GFF1448	0.73	+2.6
39,864	-		GFF1448	0.73	-0.1
39,864	-		GFF1448	0.73	+1.7
39,864	-		GFF1448	0.73	+1.1
40,437	-				+1.5
40,549	+				-1.7
40,640	+				+2.7
40,640	+				-0.3
40,722	-				-3.5
40,722	-				-0.9
40,879	-		GFF1449	0.11	+1.7
41,219	+		GFF1449	0.37	+1.6
41,220	-		GFF1449	0.37	+1.0
41,662	-		GFF1449	0.70	+0.9
41,790	+		GFF1449	0.80	+0.1
41,790	+		GFF1449	0.80	-0.3
41,790	+		GFF1449	0.80	+2.5
41,791	-		GFF1449	0.80	-1.0
41,791	-		GFF1449	0.80	-1.0
42,024	+				+0.1