Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1420 and GFF1421 are separated by 46 nucleotides GFF1421 and GFF1422 are separated by 29 nucleotides
GFF1420 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 10,520 to 12,040
GFF1420
GFF1421 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 12,087 to 13,241
GFF1421
GFF1422 - L-lactate dehydrogenase, at 13,271 to 14,431
GFF1422
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 11.277 kb on - strand, within GFF1420 at 11.623 kb on + strand, within GFF1420 at 11.623 kb on + strand, within GFF1420 at 11.623 kb on + strand, within GFF1420 at 11.623 kb on + strand, within GFF1420 at 11.624 kb on - strand, within GFF1420 at 11.694 kb on - strand, within GFF1420 at 12.255 kb on + strand, within GFF1421 at 12.255 kb on + strand, within GFF1421 at 12.255 kb on + strand, within GFF1421 at 12.256 kb on - strand, within GFF1421 at 12.256 kb on - strand, within GFF1421 at 12.256 kb on - strand, within GFF1421 at 12.804 kb on + strand, within GFF1421 at 12.804 kb on + strand, within GFF1421 at 12.804 kb on + strand, within GFF1421 at 12.896 kb on + strand, within GFF1421 at 12.976 kb on - strand, within GFF1421 at 12.987 kb on + strand, within GFF1421 at 13.149 kb on + strand at 13.337 kb on + strand at 13.830 kb on + strand, within GFF1422
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 11,277 - GFF1420 0.50 -0.7 11,623 + GFF1420 0.73 +0.0 11,623 + GFF1420 0.73 +1.4 11,623 + GFF1420 0.73 +3.4 11,623 + GFF1420 0.73 -2.5 11,624 - GFF1420 0.73 +1.2 11,694 - GFF1420 0.77 -0.5 12,255 + GFF1421 0.15 -3.0 12,255 + GFF1421 0.15 +0.4 12,255 + GFF1421 0.15 +0.1 12,256 - GFF1421 0.15 +2.0 12,256 - GFF1421 0.15 -1.4 12,256 - GFF1421 0.15 +1.0 12,804 + GFF1421 0.62 -1.7 12,804 + GFF1421 0.62 +0.4 12,804 + GFF1421 0.62 +1.0 12,896 + GFF1421 0.70 +0.9 12,976 - GFF1421 0.77 -0.2 12,987 + GFF1421 0.78 -1.0 13,149 + -1.1 13,337 + +0.8 13,830 + GFF1422 0.48 -1.8
Or see this region's nucleotide sequence