Strain Fitness in Variovorax sp. SCN45 around GFF1371

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1369 and GFF1370 are separated by 122 nucleotidesGFF1370 and GFF1371 are separated by 15 nucleotidesGFF1371 and GFF1372 are separated by 40 nucleotides GFF1369 - Serine--glyoxylate aminotransferase (EC 2.6.1.45), at 713,333 to 714,574 GFF1369 GFF1370 - Transcriptional regulator associated with Tricarboxylic transport, at 714,697 to 715,389 GFF1370 GFF1371 - Fe-S protein, homolog of lactate dehydrogenase SO1521, at 715,405 to 718,482 GFF1371 GFF1372 - Uncharacterized MFS-type transporter, at 718,523 to 719,773 GFF1372 Position (kb) 715 716 717 718 719Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 714.641 kb on + strandat 714.641 kb on + strandat 715.049 kb on - strand, within GFF1370at 715.090 kb on + strand, within GFF1370at 715.090 kb on + strand, within GFF1370at 715.090 kb on + strand, within GFF1370at 715.090 kb on + strand, within GFF1370at 715.090 kb on + strand, within GFF1370at 715.094 kb on - strand, within GFF1370at 715.162 kb on + strand, within GFF1370at 715.163 kb on - strand, within GFF1370at 715.163 kb on - strand, within GFF1370at 715.367 kb on - strandat 715.543 kb on + strandat 715.544 kb on - strandat 715.564 kb on + strandat 715.565 kb on - strandat 715.837 kb on + strand, within GFF1371at 715.838 kb on - strand, within GFF1371at 715.838 kb on - strand, within GFF1371at 716.152 kb on + strand, within GFF1371at 716.153 kb on - strand, within GFF1371at 716.215 kb on + strand, within GFF1371at 716.719 kb on + strand, within GFF1371at 716.720 kb on - strand, within GFF1371at 716.741 kb on - strand, within GFF1371at 716.854 kb on + strand, within GFF1371at 716.854 kb on + strand, within GFF1371at 716.855 kb on - strand, within GFF1371at 716.855 kb on - strand, within GFF1371at 716.855 kb on - strand, within GFF1371at 717.257 kb on - strand, within GFF1371at 717.257 kb on - strand, within GFF1371at 717.463 kb on + strand, within GFF1371at 717.464 kb on - strand, within GFF1371at 717.464 kb on - strand, within GFF1371at 717.820 kb on + strand, within GFF1371at 717.821 kb on - strand, within GFF1371at 717.931 kb on - strand, within GFF1371at 718.391 kb on + strandat 718.391 kb on + strandat 718.392 kb on - strandat 718.392 kb on - strandat 718.392 kb on - strandat 718.431 kb on - strandat 718.700 kb on + strand, within GFF1372at 718.700 kb on + strand, within GFF1372at 718.701 kb on - strand, within GFF1372at 718.701 kb on - strand, within GFF1372at 718.701 kb on - strand, within GFF1372at 718.743 kb on - strand, within GFF1372at 718.991 kb on + strand, within GFF1372at 718.991 kb on + strand, within GFF1372at 718.991 kb on + strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.253 kb on - strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.274 kb on - strand, within GFF1372at 719.282 kb on + strand, within GFF1372at 719.282 kb on + strand, within GFF1372at 719.282 kb on + strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.348 kb on + strand, within GFF1372at 719.348 kb on + strand, within GFF1372at 719.348 kb on + strand, within GFF1372at 719.348 kb on + strand, within GFF1372

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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714,641 + -1.0
714,641 + -2.9
715,049 - GFF1370 0.51 -1.7
715,090 + GFF1370 0.57 -0.5
715,090 + GFF1370 0.57 -3.8
715,090 + GFF1370 0.57 -1.2
715,090 + GFF1370 0.57 -3.6
715,090 + GFF1370 0.57 -0.2
715,094 - GFF1370 0.57 +0.0
715,162 + GFF1370 0.67 +1.3
715,163 - GFF1370 0.67 +0.6
715,163 - GFF1370 0.67 -2.3
715,367 - -0.4
715,543 + -0.1
715,544 - +1.5
715,564 + +0.3
715,565 - -2.2
715,837 + GFF1371 0.14 +2.4
715,838 - GFF1371 0.14 +2.2
715,838 - GFF1371 0.14 -2.3
716,152 + GFF1371 0.24 -3.0
716,153 - GFF1371 0.24 -1.8
716,215 + GFF1371 0.26 -1.7
716,719 + GFF1371 0.43 +0.2
716,720 - GFF1371 0.43 +0.3
716,741 - GFF1371 0.43 -0.1
716,854 + GFF1371 0.47 -1.8
716,854 + GFF1371 0.47 +0.6
716,855 - GFF1371 0.47 -1.6
716,855 - GFF1371 0.47 -0.3
716,855 - GFF1371 0.47 +0.8
717,257 - GFF1371 0.60 +0.6
717,257 - GFF1371 0.60 -1.3
717,463 + GFF1371 0.67 +0.0
717,464 - GFF1371 0.67 +0.0
717,464 - GFF1371 0.67 -0.5
717,820 + GFF1371 0.78 -3.4
717,821 - GFF1371 0.78 -0.7
717,931 - GFF1371 0.82 -0.7
718,391 + -3.7
718,391 + +1.6
718,392 - -1.2
718,392 - -1.8
718,392 - +0.3
718,431 - -0.2
718,700 + GFF1372 0.14 -2.8
718,700 + GFF1372 0.14 -1.2
718,701 - GFF1372 0.14 -0.7
718,701 - GFF1372 0.14 +0.0
718,701 - GFF1372 0.14 -1.4
718,743 - GFF1372 0.18 +1.1
718,991 + GFF1372 0.37 +0.5
718,991 + GFF1372 0.37 +0.3
718,991 + GFF1372 0.37 -1.2
718,992 - GFF1372 0.37 -1.6
718,992 - GFF1372 0.37 +1.6
718,992 - GFF1372 0.37 -2.1
718,992 - GFF1372 0.37 -3.0
718,992 - GFF1372 0.37 -3.4
719,200 + GFF1372 0.54 -1.5
719,200 + GFF1372 0.54 -0.3
719,200 + GFF1372 0.54 -0.4
719,200 + GFF1372 0.54 +0.4
719,253 - GFF1372 0.58 -3.4
719,273 + GFF1372 0.60 -2.0
719,273 + GFF1372 0.60 +0.5
719,273 + GFF1372 0.60 -3.6
719,273 + GFF1372 0.60 +1.3
719,273 + GFF1372 0.60 -2.3
719,273 + GFF1372 0.60 -0.1
719,274 - GFF1372 0.60 +0.8
719,282 + GFF1372 0.61 -1.1
719,282 + GFF1372 0.61 -0.6
719,282 + GFF1372 0.61 -0.4
719,283 - GFF1372 0.61 +1.0
719,283 - GFF1372 0.61 +0.6
719,283 - GFF1372 0.61 +1.4
719,283 - GFF1372 0.61 +0.1
719,348 + GFF1372 0.66 -3.5
719,348 + GFF1372 0.66 +2.4
719,348 + GFF1372 0.66 +0.1
719,348 + GFF1372 0.66 -3.5

Or see this region's nucleotide sequence