Strain Fitness in Variovorax sp. SCN45 around GFF1330

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1327 and GFF1328 overlap by 4 nucleotidesGFF1328 and GFF1329 are separated by 10 nucleotidesGFF1329 and GFF1330 overlap by 4 nucleotidesGFF1330 and GFF1331 are separated by 60 nucleotides GFF1327 - Cell division protein BolA, at 667,495 to 667,788 GFF1327 GFF1328 - Intracellular septation protein IspA, at 667,785 to 668,327 GFF1328 GFF1329 - Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12), at 668,338 to 668,754 GFF1329 GFF1330 - UPF0061 protein YdiU, at 668,751 to 670,232 GFF1330 GFF1331 - Transcriptional regulator, AraC family, at 670,293 to 671,372 GFF1331 Position (kb) 668 669 670 671Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 667.767 kb on + strandat 667.768 kb on - strandat 667.773 kb on + strandat 667.774 kb on - strandat 667.774 kb on - strandat 667.812 kb on - strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.740 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.807 kb on - strandat 668.807 kb on - strandat 668.831 kb on - strandat 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.109 kb on + strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.319 kb on + strand, within GFF1330at 669.319 kb on + strand, within GFF1330at 669.320 kb on - strand, within GFF1330at 669.349 kb on + strand, within GFF1330at 669.350 kb on - strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.862 kb on + strand, within GFF1330at 669.862 kb on + strand, within GFF1330at 669.863 kb on - strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.980 kb on - strand, within GFF1330at 669.980 kb on - strand, within GFF1330at 670.430 kb on + strand, within GFF1331at 670.430 kb on + strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.898 kb on - strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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667,767 + -1.2
667,768 - -2.5
667,773 + -0.7
667,774 - -2.0
667,774 - -0.7
667,812 - -1.1
667,828 + +1.6
667,828 + -1.4
667,828 + -0.7
667,828 + -1.5
667,828 + +2.3
667,828 + -1.0
667,828 + +0.6
667,828 + +1.6
667,829 - -1.2
667,829 - +1.6
667,829 - -1.0
667,829 - +0.6
667,829 - +0.0
667,829 - -2.3
667,829 - -2.2
667,829 - +0.0
667,829 - -1.7
667,829 - -1.5
667,829 - -1.4
667,829 - -1.0
668,384 + GFF1329 0.11 -1.4
668,384 + GFF1329 0.11 +1.5
668,384 + GFF1329 0.11 +0.7
668,385 - GFF1329 0.11 +0.1
668,385 - GFF1329 0.11 -1.8
668,385 - GFF1329 0.11 -1.9
668,385 - GFF1329 0.11 -1.4
668,385 - GFF1329 0.11 -1.2
668,385 - GFF1329 0.11 +3.3
668,603 + GFF1329 0.64 -1.2
668,603 + GFF1329 0.64 +1.6
668,603 + GFF1329 0.64 -2.0
668,603 + GFF1329 0.64 +1.2
668,603 + GFF1329 0.64 +0.6
668,603 + GFF1329 0.64 -2.1
668,604 - GFF1329 0.64 +0.1
668,604 - GFF1329 0.64 +0.4
668,604 - GFF1329 0.64 -2.2
668,604 - GFF1329 0.64 -1.4
668,604 - GFF1329 0.64 -0.4
668,604 - GFF1329 0.64 -4.0
668,604 - GFF1329 0.64 +0.9
668,604 - GFF1329 0.64 +0.4
668,604 - GFF1329 0.64 -1.0
668,630 + GFF1329 0.70 -0.7
668,630 + GFF1329 0.70 -1.0
668,630 + GFF1329 0.70 -2.3
668,630 + GFF1329 0.70 -2.8
668,630 + GFF1329 0.70 +0.5
668,631 - GFF1329 0.70 -0.9
668,631 - GFF1329 0.70 -2.1
668,631 - GFF1329 0.70 -2.8
668,740 + -0.7
668,806 + -1.2
668,806 + -2.1
668,806 + -0.0
668,806 + -1.2
668,806 + -1.0
668,806 + +0.0
668,806 + -0.3
668,807 - -1.5
668,807 - +0.0
668,831 - -2.3
669,079 + GFF1330 0.22 +0.1
669,079 + GFF1330 0.22 -2.6
669,079 + GFF1330 0.22 -0.9
669,079 + GFF1330 0.22 +0.6
669,079 + GFF1330 0.22 -0.5
669,079 + GFF1330 0.22 -1.0
669,079 + GFF1330 0.22 -2.1
669,079 + GFF1330 0.22 -0.5
669,080 - GFF1330 0.22 -0.7
669,080 - GFF1330 0.22 -2.6
669,080 - GFF1330 0.22 +0.6
669,080 - GFF1330 0.22 -0.7
669,080 - GFF1330 0.22 +0.7
669,080 - GFF1330 0.22 -2.5
669,109 + GFF1330 0.24 -0.6
669,110 - GFF1330 0.24 -0.5
669,110 - GFF1330 0.24 -1.5
669,110 - GFF1330 0.24 -0.9
669,238 + GFF1330 0.33 +0.8
669,238 + GFF1330 0.33 -0.4
669,238 + GFF1330 0.33 +2.2
669,239 - GFF1330 0.33 +0.3
669,239 - GFF1330 0.33 +0.0
669,239 - GFF1330 0.33 +0.0
669,239 - GFF1330 0.33 +1.2
669,239 - GFF1330 0.33 -4.2
669,239 - GFF1330 0.33 -0.4
669,262 - GFF1330 0.34 -4.3
669,262 - GFF1330 0.34 -2.6
669,262 - GFF1330 0.34 +2.0
669,319 + GFF1330 0.38 -2.3
669,319 + GFF1330 0.38 -1.5
669,320 - GFF1330 0.38 -1.7
669,349 + GFF1330 0.40 -2.9
669,350 - GFF1330 0.40 +1.6
669,547 + GFF1330 0.54 +0.9
669,547 + GFF1330 0.54 +1.0
669,547 + GFF1330 0.54 -0.4
669,607 + GFF1330 0.58 -0.0
669,607 + GFF1330 0.58 +0.0
669,607 + GFF1330 0.58 +1.2
669,607 + GFF1330 0.58 +1.1
669,607 + GFF1330 0.58 -0.0
669,607 + GFF1330 0.58 -0.3
669,607 + GFF1330 0.58 +0.4
669,607 + GFF1330 0.58 -0.3
669,608 - GFF1330 0.58 -2.2
669,608 - GFF1330 0.58 -1.0
669,608 - GFF1330 0.58 -0.4
669,608 - GFF1330 0.58 -1.5
669,608 - GFF1330 0.58 -2.4
669,608 - GFF1330 0.58 -2.6
669,608 - GFF1330 0.58 -1.8
669,862 + GFF1330 0.75 -1.4
669,862 + GFF1330 0.75 -1.2
669,863 - GFF1330 0.75 -1.8
669,979 + GFF1330 0.83 -1.7
669,979 + GFF1330 0.83 +0.6
669,979 + GFF1330 0.83 +0.6
669,979 + GFF1330 0.83 -2.5
669,979 + GFF1330 0.83 -0.8
669,979 + GFF1330 0.83 -1.1
669,980 - GFF1330 0.83 -0.4
669,980 - GFF1330 0.83 -0.9
670,430 + GFF1331 0.13 -3.5
670,430 + GFF1331 0.13 +0.0
670,431 - GFF1331 0.13 -0.4
670,431 - GFF1331 0.13 -0.5
670,431 - GFF1331 0.13 +1.6
670,431 - GFF1331 0.13 +1.0
670,431 - GFF1331 0.13 -1.0
670,450 + GFF1331 0.15 -0.9
670,450 + GFF1331 0.15 +0.2
670,450 + GFF1331 0.15 +0.3
670,450 + GFF1331 0.15 -0.4
670,450 + GFF1331 0.15 -0.4
670,450 + GFF1331 0.15 +0.0
670,451 - GFF1331 0.15 +0.6
670,451 - GFF1331 0.15 +0.4
670,451 - GFF1331 0.15 -1.3
670,451 - GFF1331 0.15 -1.5
670,451 - GFF1331 0.15 +0.0
670,451 - GFF1331 0.15 +3.8
670,451 - GFF1331 0.15 -0.4
670,699 + GFF1331 0.38 +1.1
670,699 + GFF1331 0.38 +0.4
670,699 + GFF1331 0.38 +1.8
670,699 + GFF1331 0.38 -1.2
670,699 + GFF1331 0.38 +0.2
670,699 + GFF1331 0.38 -0.4
670,699 + GFF1331 0.38 +0.6
670,700 - GFF1331 0.38 +0.6
670,700 - GFF1331 0.38 -1.0
670,700 - GFF1331 0.38 -0.7
670,700 - GFF1331 0.38 -0.5
670,700 - GFF1331 0.38 -2.1
670,700 - GFF1331 0.38 +1.9
670,898 - GFF1331 0.56 -1.3
671,014 + GFF1331 0.67 +1.8
671,014 + GFF1331 0.67 -0.7
671,014 + GFF1331 0.67 -2.6
671,014 + GFF1331 0.67 -1.0
671,015 - GFF1331 0.67 -1.2
671,015 - GFF1331 0.67 +1.8
671,015 - GFF1331 0.67 +2.9
671,015 - GFF1331 0.67 +0.6

Or see this region's nucleotide sequence