Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1251 and GFF1252 are separated by 13 nucleotides GFF1252 and GFF1253 are separated by 10 nucleotides GFF1253 and GFF1254 are separated by 5 nucleotides GFF1254 and GFF1255 are separated by 37 nucleotides
GFF1251 - FMNH2-dependent alkanesulfonate monooxygenase (EC 1.14.14.5), at 569,576 to 570,745
GFF1251
GFF1252 - Alkanesulfonate ABC transporter permease protein SsuC, at 570,759 to 571,604
GFF1252
GFF1253 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 571,615 to 572,589
GFF1253
GFF1254 - Alkanesulfonate ABC transporter ATP-binding protein SsuB, at 572,595 to 573,428
GFF1254
GFF1255 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 573,466 to 574,752
GFF1255
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 570.772 kb on + strand at 570.772 kb on + strand at 570.773 kb on - strand at 570.950 kb on + strand, within GFF1252 at 571.236 kb on + strand, within GFF1252 at 571.236 kb on + strand, within GFF1252 at 571.237 kb on - strand, within GFF1252 at 571.509 kb on + strand, within GFF1252 at 571.510 kb on - strand, within GFF1252 at 572.071 kb on + strand, within GFF1253 at 572.279 kb on - strand, within GFF1253 at 572.281 kb on + strand, within GFF1253 at 572.281 kb on + strand, within GFF1253 at 572.282 kb on - strand, within GFF1253 at 572.282 kb on - strand, within GFF1253 at 572.335 kb on + strand, within GFF1253 at 572.336 kb on - strand, within GFF1253 at 572.458 kb on + strand, within GFF1253 at 572.458 kb on + strand, within GFF1253 at 572.458 kb on + strand, within GFF1253 at 572.459 kb on - strand, within GFF1253 at 572.823 kb on + strand, within GFF1254 at 572.824 kb on - strand, within GFF1254 at 573.568 kb on + strand at 573.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 570,772 + -1.8 570,772 + -3.5 570,773 - -0.6 570,950 + GFF1252 0.23 +0.6 571,236 + GFF1252 0.56 -2.7 571,236 + GFF1252 0.56 -1.0 571,237 - GFF1252 0.57 -0.4 571,509 + GFF1252 0.89 -2.3 571,510 - GFF1252 0.89 -1.1 572,071 + GFF1253 0.47 -1.4 572,279 - GFF1253 0.68 +0.3 572,281 + GFF1253 0.68 -1.3 572,281 + GFF1253 0.68 +0.6 572,282 - GFF1253 0.68 -2.1 572,282 - GFF1253 0.68 -0.9 572,335 + GFF1253 0.74 +0.6 572,336 - GFF1253 0.74 +0.1 572,458 + GFF1253 0.86 -2.7 572,458 + GFF1253 0.86 +0.2 572,458 + GFF1253 0.86 -2.6 572,459 - GFF1253 0.87 -3.1 572,823 + GFF1254 0.27 -1.5 572,824 - GFF1254 0.27 -2.1 573,568 + -1.9 573,569 - -0.3
Or see this region's nucleotide sequence