Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1251 and GFF1252 are separated by 13 nucleotides GFF1252 and GFF1253 are separated by 10 nucleotides GFF1253 and GFF1254 are separated by 5 nucleotides
GFF1251 - FMNH2-dependent alkanesulfonate monooxygenase (EC 1.14.14.5), at 569,576 to 570,745
GFF1251
GFF1252 - Alkanesulfonate ABC transporter permease protein SsuC, at 570,759 to 571,604
GFF1252
GFF1253 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 571,615 to 572,589
GFF1253
GFF1254 - Alkanesulfonate ABC transporter ATP-binding protein SsuB, at 572,595 to 573,428
GFF1254
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 569.934 kb on - strand, within GFF1251 at 569.934 kb on - strand, within GFF1251 at 569.955 kb on - strand, within GFF1251 at 570.029 kb on + strand, within GFF1251 at 570.071 kb on + strand, within GFF1251 at 570.093 kb on - strand, within GFF1251 at 570.161 kb on + strand, within GFF1251 at 570.162 kb on - strand, within GFF1251 at 570.474 kb on + strand, within GFF1251 at 570.474 kb on + strand, within GFF1251 at 570.608 kb on + strand, within GFF1251 at 570.772 kb on + strand at 570.772 kb on + strand at 570.773 kb on - strand at 570.950 kb on + strand, within GFF1252 at 571.236 kb on + strand, within GFF1252 at 571.236 kb on + strand, within GFF1252 at 571.237 kb on - strand, within GFF1252 at 571.509 kb on + strand, within GFF1252 at 571.510 kb on - strand, within GFF1252 at 572.071 kb on + strand, within GFF1253 at 572.279 kb on - strand, within GFF1253 at 572.281 kb on + strand, within GFF1253 at 572.281 kb on + strand, within GFF1253 at 572.282 kb on - strand, within GFF1253 at 572.282 kb on - strand, within GFF1253 at 572.335 kb on + strand, within GFF1253 at 572.336 kb on - strand, within GFF1253 at 572.458 kb on + strand, within GFF1253 at 572.458 kb on + strand, within GFF1253 at 572.458 kb on + strand, within GFF1253 at 572.459 kb on - strand, within GFF1253
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 569,934 - GFF1251 0.31 -1.7 569,934 - GFF1251 0.31 -0.1 569,955 - GFF1251 0.32 -1.2 570,029 + GFF1251 0.39 -1.4 570,071 + GFF1251 0.42 -0.5 570,093 - GFF1251 0.44 +0.2 570,161 + GFF1251 0.50 -0.7 570,162 - GFF1251 0.50 -0.4 570,474 + GFF1251 0.77 -1.7 570,474 + GFF1251 0.77 -1.4 570,608 + GFF1251 0.88 -1.8 570,772 + -1.8 570,772 + -3.5 570,773 - -0.6 570,950 + GFF1252 0.23 +0.6 571,236 + GFF1252 0.56 -2.7 571,236 + GFF1252 0.56 -1.0 571,237 - GFF1252 0.57 -0.4 571,509 + GFF1252 0.89 -2.3 571,510 - GFF1252 0.89 -1.1 572,071 + GFF1253 0.47 -1.4 572,279 - GFF1253 0.68 +0.3 572,281 + GFF1253 0.68 -1.3 572,281 + GFF1253 0.68 +0.6 572,282 - GFF1253 0.68 -2.1 572,282 - GFF1253 0.68 -0.9 572,335 + GFF1253 0.74 +0.6 572,336 - GFF1253 0.74 +0.1 572,458 + GFF1253 0.86 -2.7 572,458 + GFF1253 0.86 +0.2 572,458 + GFF1253 0.86 -2.6 572,459 - GFF1253 0.87 -3.1
Or see this region's nucleotide sequence