Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1248 and GFF1249 are separated by 123 nucleotides GFF1249 and GFF1250 are separated by 31 nucleotides GFF1250 and GFF1251 overlap by 1 nucleotides
GFF1248 - FMN reductase (NADPH) (EC 1.5.1.38), at 567,743 to 568,327
GFF1248
GFF1249 - hypothetical protein, at 568,451 to 568,588
GFF1249
GFF1250 - Alkanesulfonate ABC transporter substrate-binding protein SsuA, at 568,620 to 569,576
GFF1250
GFF1251 - FMNH2-dependent alkanesulfonate monooxygenase (EC 1.14.14.5), at 569,576 to 570,745
GFF1251
Position (kb) 568
569
570 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 567.971 kb on + strand, within GFF1248 at 567.971 kb on + strand, within GFF1248 at 567.971 kb on + strand, within GFF1248 at 567.972 kb on - strand, within GFF1248 at 567.972 kb on - strand, within GFF1248 at 567.972 kb on - strand, within GFF1248 at 567.983 kb on + strand, within GFF1248 at 567.983 kb on + strand, within GFF1248 at 567.983 kb on + strand, within GFF1248 at 567.984 kb on - strand, within GFF1248 at 568.098 kb on - strand, within GFF1248 at 568.098 kb on - strand, within GFF1248 at 568.154 kb on + strand, within GFF1248 at 568.154 kb on + strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.196 kb on + strand, within GFF1248 at 568.196 kb on + strand, within GFF1248 at 568.318 kb on + strand at 568.318 kb on + strand at 568.319 kb on - strand at 568.319 kb on - strand at 568.319 kb on - strand at 568.319 kb on - strand at 568.746 kb on + strand, within GFF1250 at 568.746 kb on + strand, within GFF1250 at 568.747 kb on - strand, within GFF1250 at 568.935 kb on + strand, within GFF1250 at 568.936 kb on - strand, within GFF1250 at 568.936 kb on - strand, within GFF1250 at 569.051 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.121 kb on + strand, within GFF1250 at 569.269 kb on - strand, within GFF1250 at 569.269 kb on - strand, within GFF1250 at 569.271 kb on + strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.289 kb on + strand, within GFF1250 at 569.289 kb on + strand, within GFF1250 at 569.290 kb on - strand, within GFF1250 at 569.618 kb on + strand at 569.660 kb on + strand at 569.661 kb on - strand at 569.661 kb on - strand at 569.661 kb on - strand at 569.700 kb on - strand, within GFF1251 at 569.934 kb on - strand, within GFF1251 at 569.934 kb on - strand, within GFF1251 at 569.955 kb on - strand, within GFF1251 at 570.029 kb on + strand, within GFF1251 at 570.071 kb on + strand, within GFF1251 at 570.093 kb on - strand, within GFF1251 at 570.161 kb on + strand, within GFF1251 at 570.162 kb on - strand, within GFF1251 at 570.474 kb on + strand, within GFF1251 at 570.474 kb on + strand, within GFF1251
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 567,971 + GFF1248 0.39 +0.4 567,971 + GFF1248 0.39 -0.5 567,971 + GFF1248 0.39 -0.9 567,972 - GFF1248 0.39 -1.5 567,972 - GFF1248 0.39 +1.6 567,972 - GFF1248 0.39 -0.9 567,983 + GFF1248 0.41 -0.9 567,983 + GFF1248 0.41 -1.7 567,983 + GFF1248 0.41 -0.4 567,984 - GFF1248 0.41 +0.4 568,098 - GFF1248 0.61 -0.0 568,098 - GFF1248 0.61 -2.5 568,154 + GFF1248 0.70 -2.4 568,154 + GFF1248 0.70 -1.2 568,155 - GFF1248 0.70 -0.7 568,155 - GFF1248 0.70 -1.4 568,155 - GFF1248 0.70 -1.4 568,155 - GFF1248 0.70 +0.6 568,155 - GFF1248 0.70 -1.5 568,155 - GFF1248 0.70 -3.1 568,155 - GFF1248 0.70 -3.5 568,155 - GFF1248 0.70 -1.8 568,155 - GFF1248 0.70 -2.1 568,155 - GFF1248 0.70 -0.3 568,196 + GFF1248 0.77 -3.9 568,196 + GFF1248 0.77 +0.1 568,318 + -0.9 568,318 + -1.0 568,319 - +0.2 568,319 - +0.3 568,319 - +0.6 568,319 - -1.4 568,746 + GFF1250 0.13 +3.3 568,746 + GFF1250 0.13 -0.3 568,747 - GFF1250 0.13 -3.2 568,935 + GFF1250 0.33 +0.6 568,936 - GFF1250 0.33 -0.0 568,936 - GFF1250 0.33 -1.9 569,051 + GFF1250 0.45 +0.3 569,061 + GFF1250 0.46 +1.9 569,061 + GFF1250 0.46 -1.2 569,061 + GFF1250 0.46 +0.8 569,061 + GFF1250 0.46 -0.7 569,121 + GFF1250 0.52 +2.2 569,269 - GFF1250 0.68 -0.4 569,269 - GFF1250 0.68 -1.8 569,271 + GFF1250 0.68 -1.8 569,272 - GFF1250 0.68 -0.3 569,272 - GFF1250 0.68 -0.7 569,272 - GFF1250 0.68 +0.5 569,272 - GFF1250 0.68 -0.9 569,272 - GFF1250 0.68 +3.0 569,289 + GFF1250 0.70 +0.9 569,289 + GFF1250 0.70 +1.2 569,290 - GFF1250 0.70 +0.9 569,618 + -2.6 569,660 + -1.5 569,661 - +0.9 569,661 - -0.2 569,661 - -0.4 569,700 - GFF1251 0.11 +0.9 569,934 - GFF1251 0.31 -1.7 569,934 - GFF1251 0.31 -0.1 569,955 - GFF1251 0.32 -1.2 570,029 + GFF1251 0.39 -1.4 570,071 + GFF1251 0.42 -0.5 570,093 - GFF1251 0.44 +0.2 570,161 + GFF1251 0.50 -0.7 570,162 - GFF1251 0.50 -0.4 570,474 + GFF1251 0.77 -1.7 570,474 + GFF1251 0.77 -1.4
Or see this region's nucleotide sequence