Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1242 and GFF1243 are separated by 195 nucleotides GFF1243 and GFF1244 are separated by 113 nucleotides GFF1244 and GFF1245 are separated by 22 nucleotides
GFF1242 - hypothetical protein, at 561,220 to 562,743
GFF1242
GFF1243 - transglutaminase, N-terminal domain protein, at 562,939 to 563,847
GFF1243
GFF1244 - Uncharacterized protein YqjZ, at 563,961 to 564,293
GFF1244
GFF1245 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 564,316 to 566,157
GFF1245
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 561.977 kb on + strand, within GFF1242 at 562.029 kb on - strand, within GFF1242 at 562.029 kb on - strand, within GFF1242 at 562.067 kb on - strand, within GFF1242 at 562.082 kb on + strand, within GFF1242 at 562.082 kb on + strand, within GFF1242 at 562.082 kb on + strand, within GFF1242 at 562.083 kb on - strand, within GFF1242 at 562.083 kb on - strand, within GFF1242 at 562.083 kb on - strand, within GFF1242 at 562.109 kb on + strand, within GFF1242 at 562.109 kb on + strand, within GFF1242 at 562.109 kb on + strand, within GFF1242 at 562.109 kb on + strand, within GFF1242 at 562.110 kb on - strand, within GFF1242 at 562.110 kb on - strand, within GFF1242 at 562.110 kb on - strand, within GFF1242 at 562.110 kb on - strand, within GFF1242 at 562.110 kb on - strand, within GFF1242 at 562.110 kb on - strand, within GFF1242 at 562.110 kb on - strand, within GFF1242 at 562.271 kb on + strand, within GFF1242 at 562.271 kb on + strand, within GFF1242 at 562.272 kb on - strand, within GFF1242 at 562.272 kb on - strand, within GFF1242 at 562.274 kb on + strand, within GFF1242 at 562.274 kb on + strand, within GFF1242 at 562.274 kb on + strand, within GFF1242 at 562.274 kb on + strand, within GFF1242 at 562.274 kb on + strand, within GFF1242 at 562.275 kb on - strand, within GFF1242 at 562.275 kb on - strand, within GFF1242 at 562.275 kb on - strand, within GFF1242 at 562.275 kb on - strand, within GFF1242 at 562.275 kb on - strand, within GFF1242 at 562.275 kb on - strand, within GFF1242 at 562.275 kb on - strand, within GFF1242 at 562.286 kb on + strand, within GFF1242 at 562.286 kb on + strand, within GFF1242 at 562.287 kb on - strand, within GFF1242 at 562.287 kb on - strand, within GFF1242 at 562.287 kb on - strand, within GFF1242 at 562.287 kb on - strand, within GFF1242 at 562.326 kb on - strand, within GFF1242 at 562.388 kb on + strand, within GFF1242 at 562.388 kb on + strand, within GFF1242 at 562.388 kb on + strand, within GFF1242 at 562.388 kb on + strand, within GFF1242 at 562.389 kb on - strand, within GFF1242 at 562.389 kb on - strand, within GFF1242 at 562.389 kb on - strand, within GFF1242 at 562.389 kb on - strand, within GFF1242 at 562.434 kb on - strand, within GFF1242 at 562.434 kb on - strand, within GFF1242 at 562.434 kb on - strand, within GFF1242 at 562.434 kb on - strand, within GFF1242 at 562.434 kb on - strand, within GFF1242 at 562.488 kb on + strand, within GFF1242 at 562.489 kb on - strand, within GFF1242 at 562.554 kb on + strand, within GFF1242 at 562.555 kb on - strand, within GFF1242 at 562.828 kb on + strand at 562.828 kb on + strand at 562.829 kb on - strand at 562.829 kb on - strand at 562.853 kb on + strand at 562.853 kb on + strand at 562.853 kb on + strand at 562.853 kb on + strand at 562.853 kb on + strand at 562.854 kb on - strand at 562.871 kb on + strand at 562.985 kb on + strand at 562.985 kb on + strand at 562.985 kb on + strand at 562.985 kb on + strand at 562.985 kb on + strand at 562.985 kb on + strand at 562.986 kb on - strand at 562.986 kb on - strand at 562.986 kb on - strand at 562.986 kb on - strand at 563.004 kb on - strand at 563.126 kb on + strand, within GFF1243 at 563.127 kb on - strand, within GFF1243 at 563.127 kb on - strand, within GFF1243 at 563.127 kb on - strand, within GFF1243 at 563.127 kb on - strand, within GFF1243 at 563.127 kb on - strand, within GFF1243 at 563.210 kb on + strand, within GFF1243 at 563.210 kb on + strand, within GFF1243 at 563.211 kb on - strand, within GFF1243 at 563.211 kb on - strand, within GFF1243 at 563.211 kb on - strand, within GFF1243 at 563.211 kb on - strand, within GFF1243 at 563.211 kb on - strand, within GFF1243 at 563.211 kb on - strand, within GFF1243 at 563.211 kb on - strand, within GFF1243 at 563.216 kb on + strand, within GFF1243 at 563.216 kb on + strand, within GFF1243 at 563.216 kb on + strand, within GFF1243 at 563.216 kb on + strand, within GFF1243 at 563.216 kb on + strand, within GFF1243 at 563.216 kb on + strand, within GFF1243 at 563.217 kb on - strand, within GFF1243 at 563.217 kb on - strand, within GFF1243 at 563.217 kb on - strand, within GFF1243 at 563.279 kb on + strand, within GFF1243 at 563.279 kb on + strand, within GFF1243 at 563.279 kb on + strand, within GFF1243 at 563.280 kb on - strand, within GFF1243 at 563.354 kb on + strand, within GFF1243 at 563.354 kb on + strand, within GFF1243 at 563.354 kb on + strand, within GFF1243 at 563.354 kb on + strand, within GFF1243 at 563.355 kb on - strand, within GFF1243 at 563.355 kb on - strand, within GFF1243 at 563.355 kb on - strand, within GFF1243 at 563.355 kb on - strand, within GFF1243 at 563.355 kb on - strand, within GFF1243 at 563.492 kb on + strand, within GFF1243 at 563.492 kb on + strand, within GFF1243 at 563.492 kb on + strand, within GFF1243 at 563.493 kb on - strand, within GFF1243 at 563.493 kb on - strand, within GFF1243 at 563.493 kb on - strand, within GFF1243 at 563.795 kb on + strand at 563.796 kb on - strand at 563.802 kb on - strand at 563.825 kb on + strand at 563.825 kb on + strand at 563.825 kb on + strand at 563.825 kb on + strand at 563.964 kb on + strand at 563.964 kb on + strand at 563.964 kb on + strand at 563.964 kb on + strand at 563.964 kb on + strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 563.965 kb on - strand at 564.060 kb on + strand, within GFF1244 at 564.114 kb on + strand, within GFF1244 at 564.114 kb on + strand, within GFF1244 at 564.114 kb on + strand, within GFF1244 at 564.114 kb on + strand, within GFF1244 at 564.115 kb on - strand, within GFF1244 at 564.115 kb on - strand, within GFF1244 at 564.115 kb on - strand, within GFF1244 at 564.115 kb on - strand, within GFF1244 at 564.115 kb on - strand, within GFF1244 at 564.117 kb on + strand, within GFF1244 at 564.117 kb on + strand, within GFF1244 at 564.117 kb on + strand, within GFF1244 at 564.117 kb on + strand, within GFF1244 at 564.117 kb on + strand, within GFF1244 at 564.118 kb on - strand, within GFF1244 at 564.118 kb on - strand, within GFF1244 at 564.118 kb on - strand, within GFF1244 at 564.118 kb on - strand, within GFF1244 at 564.118 kb on - strand, within GFF1244 at 564.118 kb on - strand, within GFF1244 at 564.118 kb on - strand, within GFF1244 at 564.207 kb on + strand, within GFF1244 at 564.207 kb on + strand, within GFF1244 at 564.207 kb on + strand, within GFF1244 at 564.207 kb on + strand, within GFF1244 at 564.208 kb on - strand, within GFF1244 at 564.208 kb on - strand, within GFF1244 at 564.208 kb on - strand, within GFF1244 at 564.240 kb on + strand, within GFF1244 at 564.240 kb on + strand, within GFF1244 at 564.240 kb on + strand, within GFF1244 at 564.241 kb on - strand, within GFF1244 at 564.241 kb on - strand, within GFF1244 at 564.241 kb on - strand, within GFF1244 at 564.241 kb on - strand, within GFF1244 at 564.241 kb on - strand, within GFF1244 at 564.241 kb on - strand, within GFF1244 at 564.241 kb on - strand, within GFF1244
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 561,977 + GFF1242 0.50 +1.2 562,029 - GFF1242 0.53 +0.7 562,029 - GFF1242 0.53 +0.8 562,067 - GFF1242 0.56 +0.2 562,082 + GFF1242 0.57 +1.2 562,082 + GFF1242 0.57 +0.4 562,082 + GFF1242 0.57 -0.9 562,083 - GFF1242 0.57 -1.7 562,083 - GFF1242 0.57 -1.7 562,083 - GFF1242 0.57 -1.0 562,109 + GFF1242 0.58 -0.3 562,109 + GFF1242 0.58 -0.9 562,109 + GFF1242 0.58 -3.5 562,109 + GFF1242 0.58 +1.4 562,110 - GFF1242 0.58 -3.4 562,110 - GFF1242 0.58 -1.2 562,110 - GFF1242 0.58 -1.3 562,110 - GFF1242 0.58 +0.7 562,110 - GFF1242 0.58 -0.9 562,110 - GFF1242 0.58 +0.2 562,110 - GFF1242 0.58 -0.3 562,271 + GFF1242 0.69 +0.5 562,271 + GFF1242 0.69 -0.3 562,272 - GFF1242 0.69 +0.8 562,272 - GFF1242 0.69 +1.7 562,274 + GFF1242 0.69 -1.5 562,274 + GFF1242 0.69 -2.5 562,274 + GFF1242 0.69 -0.9 562,274 + GFF1242 0.69 -0.8 562,274 + GFF1242 0.69 -1.3 562,275 - GFF1242 0.69 -0.3 562,275 - GFF1242 0.69 -2.1 562,275 - GFF1242 0.69 -3.1 562,275 - GFF1242 0.69 -0.7 562,275 - GFF1242 0.69 -2.1 562,275 - GFF1242 0.69 -2.5 562,275 - GFF1242 0.69 +1.1 562,286 + GFF1242 0.70 -3.4 562,286 + GFF1242 0.70 -1.4 562,287 - GFF1242 0.70 -1.7 562,287 - GFF1242 0.70 +0.7 562,287 - GFF1242 0.70 -1.7 562,287 - GFF1242 0.70 -1.3 562,326 - GFF1242 0.73 -0.0 562,388 + GFF1242 0.77 -2.0 562,388 + GFF1242 0.77 -0.3 562,388 + GFF1242 0.77 -2.2 562,388 + GFF1242 0.77 -1.6 562,389 - GFF1242 0.77 -2.0 562,389 - GFF1242 0.77 +0.7 562,389 - GFF1242 0.77 +0.8 562,389 - GFF1242 0.77 +0.4 562,434 - GFF1242 0.80 -0.9 562,434 - GFF1242 0.80 -0.8 562,434 - GFF1242 0.80 +1.4 562,434 - GFF1242 0.80 -1.1 562,434 - GFF1242 0.80 -0.2 562,488 + GFF1242 0.83 -0.7 562,489 - GFF1242 0.83 +0.3 562,554 + GFF1242 0.88 -1.5 562,555 - GFF1242 0.88 +1.8 562,828 + +0.3 562,828 + -2.7 562,829 - +0.5 562,829 - +1.0 562,853 + +1.5 562,853 + +0.3 562,853 + -0.9 562,853 + +0.1 562,853 + -1.5 562,854 - +1.1 562,871 + -0.7 562,985 + -0.5 562,985 + +0.1 562,985 + +0.8 562,985 + -1.0 562,985 + -3.2 562,985 + -2.5 562,986 - -1.3 562,986 - -2.0 562,986 - +3.4 562,986 - -0.1 563,004 - -2.1 563,126 + GFF1243 0.21 +0.7 563,127 - GFF1243 0.21 -1.4 563,127 - GFF1243 0.21 -1.0 563,127 - GFF1243 0.21 +0.7 563,127 - GFF1243 0.21 -2.0 563,127 - GFF1243 0.21 +0.1 563,210 + GFF1243 0.30 +1.7 563,210 + GFF1243 0.30 +0.7 563,211 - GFF1243 0.30 +0.8 563,211 - GFF1243 0.30 +0.2 563,211 - GFF1243 0.30 +1.1 563,211 - GFF1243 0.30 -1.2 563,211 - GFF1243 0.30 +1.2 563,211 - GFF1243 0.30 -1.8 563,211 - GFF1243 0.30 -1.1 563,216 + GFF1243 0.30 +0.1 563,216 + GFF1243 0.30 -1.7 563,216 + GFF1243 0.30 +0.4 563,216 + GFF1243 0.30 +1.3 563,216 + GFF1243 0.30 -2.5 563,216 + GFF1243 0.30 -0.4 563,217 - GFF1243 0.31 +0.1 563,217 - GFF1243 0.31 +0.8 563,217 - GFF1243 0.31 -1.3 563,279 + GFF1243 0.37 +2.8 563,279 + GFF1243 0.37 +2.8 563,279 + GFF1243 0.37 +0.2 563,280 - GFF1243 0.38 +1.9 563,354 + GFF1243 0.46 -1.3 563,354 + GFF1243 0.46 -1.9 563,354 + GFF1243 0.46 -0.3 563,354 + GFF1243 0.46 -0.5 563,355 - GFF1243 0.46 +0.4 563,355 - GFF1243 0.46 +0.2 563,355 - GFF1243 0.46 -3.1 563,355 - GFF1243 0.46 -3.5 563,355 - GFF1243 0.46 +0.3 563,492 + GFF1243 0.61 +1.7 563,492 + GFF1243 0.61 -1.7 563,492 + GFF1243 0.61 -0.7 563,493 - GFF1243 0.61 -0.4 563,493 - GFF1243 0.61 -2.3 563,493 - GFF1243 0.61 -1.5 563,795 + +1.0 563,796 - -2.4 563,802 - -0.5 563,825 + +2.6 563,825 + +4.0 563,825 + +0.3 563,825 + -2.7 563,964 + -0.7 563,964 + -1.1 563,964 + -1.8 563,964 + +0.4 563,964 + -0.2 563,965 - +0.9 563,965 - -1.7 563,965 - -0.3 563,965 - +2.2 563,965 - -2.1 563,965 - +1.2 563,965 - -2.1 563,965 - -1.1 563,965 - -2.6 563,965 - +2.0 564,060 + GFF1244 0.30 -1.8 564,114 + GFF1244 0.46 +3.2 564,114 + GFF1244 0.46 -0.5 564,114 + GFF1244 0.46 +0.4 564,114 + GFF1244 0.46 -2.1 564,115 - GFF1244 0.46 +0.2 564,115 - GFF1244 0.46 -0.6 564,115 - GFF1244 0.46 +1.1 564,115 - GFF1244 0.46 -0.9 564,115 - GFF1244 0.46 +2.5 564,117 + GFF1244 0.47 +0.7 564,117 + GFF1244 0.47 -0.0 564,117 + GFF1244 0.47 -0.1 564,117 + GFF1244 0.47 -1.9 564,117 + GFF1244 0.47 -0.7 564,118 - GFF1244 0.47 -1.1 564,118 - GFF1244 0.47 +0.4 564,118 - GFF1244 0.47 -0.3 564,118 - GFF1244 0.47 -1.1 564,118 - GFF1244 0.47 -1.3 564,118 - GFF1244 0.47 +1.5 564,118 - GFF1244 0.47 -1.1 564,207 + GFF1244 0.74 -2.2 564,207 + GFF1244 0.74 +1.0 564,207 + GFF1244 0.74 -2.7 564,207 + GFF1244 0.74 +0.3 564,208 - GFF1244 0.74 -0.9 564,208 - GFF1244 0.74 -1.8 564,208 - GFF1244 0.74 +0.0 564,240 + GFF1244 0.84 -0.3 564,240 + GFF1244 0.84 -0.2 564,240 + GFF1244 0.84 -3.4 564,241 - GFF1244 0.84 -2.0 564,241 - GFF1244 0.84 +0.9 564,241 - GFF1244 0.84 -3.6 564,241 - GFF1244 0.84 -0.1 564,241 - GFF1244 0.84 -0.3 564,241 - GFF1244 0.84 +0.2 564,241 - GFF1244 0.84 +1.5
Or see this region's nucleotide sequence