Strain Fitness in Variovorax sp. SCN45 around GFF1215

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1214 and GFF1215 are separated by 73 nucleotidesGFF1215 and GFF1216 are separated by 35 nucleotides GFF1214 - Oligopeptide transport substrate-binding protein @ Glutathione ABC transporter, substrate-binding protein GsiB, at 532,631 to 534,184 GFF1214 GFF1215 - Oligopeptide transport ATP-binding protein @ Glutathione ABC transporter, ATP-binding protein GsiA, at 534,258 to 536,135 GFF1215 GFF1216 - Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 536,171 to 537,142 GFF1216 Position (kb) 534 535 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.304 kb on + strand, within GFF1214at 533.305 kb on - strand, within GFF1214at 533.338 kb on - strand, within GFF1214at 533.338 kb on - strand, within GFF1214at 533.338 kb on - strand, within GFF1214at 533.556 kb on + strand, within GFF1214at 533.556 kb on + strand, within GFF1214at 533.557 kb on - strand, within GFF1214at 533.557 kb on - strand, within GFF1214at 533.802 kb on + strand, within GFF1214at 533.802 kb on + strand, within GFF1214at 533.803 kb on - strand, within GFF1214at 533.916 kb on + strand, within GFF1214at 533.917 kb on - strand, within GFF1214at 533.917 kb on - strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.944 kb on - strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.048 kb on + strandat 534.048 kb on + strandat 534.048 kb on + strandat 534.049 kb on - strandat 534.072 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 535.079 kb on - strand, within GFF1215at 535.079 kb on - strand, within GFF1215at 535.342 kb on + strand, within GFF1215at 535.343 kb on - strand, within GFF1215at 535.343 kb on - strand, within GFF1215at 535.405 kb on + strand, within GFF1215at 535.405 kb on + strand, within GFF1215at 535.405 kb on + strand, within GFF1215at 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.224 kb on - strandat 536.224 kb on - strandat 536.224 kb on - strandat 536.224 kb on - strandat 536.383 kb on - strand, within GFF1216at 536.383 kb on - strand, within GFF1216at 536.454 kb on + strand, within GFF1216at 536.454 kb on + strand, within GFF1216at 536.455 kb on - strand, within GFF1216at 536.455 kb on - strand, within GFF1216at 536.455 kb on - strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 537.051 kb on + strandat 537.052 kb on - strandat 537.052 kb on - strandat 537.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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533,304 + GFF1214 0.43 -1.2
533,305 - GFF1214 0.43 +0.0
533,338 - GFF1214 0.45 +0.4
533,338 - GFF1214 0.45 +1.5
533,338 - GFF1214 0.45 -0.4
533,556 + GFF1214 0.60 -0.3
533,556 + GFF1214 0.60 -0.9
533,557 - GFF1214 0.60 -2.2
533,557 - GFF1214 0.60 -0.4
533,802 + GFF1214 0.75 -2.2
533,802 + GFF1214 0.75 +0.1
533,803 - GFF1214 0.75 -0.9
533,916 + GFF1214 0.83 -1.7
533,917 - GFF1214 0.83 -0.4
533,917 - GFF1214 0.83 -0.5
533,943 + GFF1214 0.84 -3.0
533,943 + GFF1214 0.84 +0.1
533,943 + GFF1214 0.84 -1.9
533,943 + GFF1214 0.84 +2.3
533,943 + GFF1214 0.84 -1.2
533,944 - GFF1214 0.84 +0.4
534,003 + GFF1214 0.88 -1.6
534,003 + GFF1214 0.88 -0.8
534,003 + GFF1214 0.88 +0.6
534,003 + GFF1214 0.88 -0.7
534,003 + GFF1214 0.88 -1.5
534,004 - GFF1214 0.88 +0.6
534,004 - GFF1214 0.88 -0.7
534,004 - GFF1214 0.88 +0.3
534,004 - GFF1214 0.88 -0.9
534,004 - GFF1214 0.88 +2.6
534,004 - GFF1214 0.88 +0.3
534,004 - GFF1214 0.88 +0.1
534,048 + +0.9
534,048 + +0.2
534,048 + +0.4
534,049 - -0.4
534,072 + -1.0
534,445 + -2.5
534,445 + -2.2
534,445 + +1.5
534,445 + -0.7
534,445 + +0.3
534,445 + -2.8
534,445 + +0.3
534,446 - GFF1215 0.10 -0.3
534,446 - GFF1215 0.10 -2.8
534,446 - GFF1215 0.10 +0.9
534,446 - GFF1215 0.10 -1.2
534,446 - GFF1215 0.10 +1.3
534,508 + GFF1215 0.13 -0.5
534,508 + GFF1215 0.13 -0.4
534,508 + GFF1215 0.13 +0.6
534,508 + GFF1215 0.13 -2.4
534,508 + GFF1215 0.13 -0.8
534,509 - GFF1215 0.13 +0.6
534,509 - GFF1215 0.13 -1.4
534,509 - GFF1215 0.13 +1.7
534,509 - GFF1215 0.13 +0.1
534,509 - GFF1215 0.13 +0.4
535,079 - GFF1215 0.44 +1.3
535,079 - GFF1215 0.44 -0.9
535,342 + GFF1215 0.58 +1.4
535,343 - GFF1215 0.58 +0.4
535,343 - GFF1215 0.58 +1.0
535,405 + GFF1215 0.61 -0.4
535,405 + GFF1215 0.61 -0.0
535,405 + GFF1215 0.61 +0.6
536,223 + +0.4
536,223 + -0.2
536,223 + -0.7
536,223 + -1.6
536,223 + +1.4
536,223 + -0.9
536,223 + +0.9
536,224 - +0.2
536,224 - +2.6
536,224 - -0.0
536,224 - +2.1
536,383 - GFF1216 0.22 -2.9
536,383 - GFF1216 0.22 +0.2
536,454 + GFF1216 0.29 -1.0
536,454 + GFF1216 0.29 -0.4
536,455 - GFF1216 0.29 -0.0
536,455 - GFF1216 0.29 -3.0
536,455 - GFF1216 0.29 -0.1
536,825 + GFF1216 0.67 +0.1
536,825 + GFF1216 0.67 -1.8
536,825 + GFF1216 0.67 +0.2
536,825 + GFF1216 0.67 -2.4
536,825 + GFF1216 0.67 -0.5
536,826 - GFF1216 0.67 +0.9
536,826 - GFF1216 0.67 -2.1
536,826 - GFF1216 0.67 -0.7
536,826 - GFF1216 0.67 +2.1
536,826 - GFF1216 0.67 -1.0
537,051 + -0.9
537,052 - +0.6
537,052 - +0.2
537,052 - +0.3

Or see this region's nucleotide sequence