Strain Fitness in Variovorax sp. SCN45 around GFF1096

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1094 and GFF1095 are separated by 17 nucleotidesGFF1095 and GFF1096 are separated by 16 nucleotidesGFF1096 and GFF1097 are separated by 28 nucleotidesGFF1097 and GFF1098 are separated by 44 nucleotides GFF1094 - Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1), at 406,917 to 407,804 GFF1094 GFF1095 - Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1), at 407,822 to 408,601 GFF1095 GFF1096 - Phosphate transport system regulatory protein PhoU, at 408,618 to 409,319 GFF1096 GFF1097 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 409,348 to 410,040 GFF1097 GFF1098 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 410,085 to 411,428 GFF1098 Position (kb) 408 409 410Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 407.701 kb on - strand, within GFF1094at 407.768 kb on + strandat 407.769 kb on - strandat 407.769 kb on - strandat 407.802 kb on + strandat 407.802 kb on + strandat 407.882 kb on + strandat 407.882 kb on + strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.886 kb on - strandat 408.014 kb on + strand, within GFF1095at 408.434 kb on + strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.489 kb on - strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.578 kb on + strandat 408.578 kb on + strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.726 kb on + strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.301 kb on - strandat 409.301 kb on - strandat 409.317 kb on + strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.655 kb on - strand, within GFF1097at 409.655 kb on - strand, within GFF1097at 409.675 kb on - strand, within GFF1097at 409.731 kb on - strand, within GFF1097at 409.843 kb on + strand, within GFF1097at 409.844 kb on - strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 410.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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407,701 - GFF1094 0.88 -0.7
407,768 + -0.8
407,769 - -3.6
407,769 - -2.4
407,802 + -0.4
407,802 + -0.4
407,882 + -0.2
407,882 + -2.2
407,883 - -0.4
407,883 - -2.9
407,883 - -0.1
407,886 - +1.2
408,014 + GFF1095 0.25 +0.4
408,434 + GFF1095 0.78 -0.8
408,435 - GFF1095 0.79 -3.1
408,435 - GFF1095 0.79 +0.8
408,457 + GFF1095 0.81 +0.6
408,457 + GFF1095 0.81 -0.6
408,457 + GFF1095 0.81 -1.3
408,458 - GFF1095 0.82 +2.2
408,458 - GFF1095 0.82 +1.9
408,458 - GFF1095 0.82 +0.8
408,489 - GFF1095 0.86 +1.0
408,497 + GFF1095 0.87 -0.8
408,497 + GFF1095 0.87 +0.7
408,497 + GFF1095 0.87 -2.6
408,497 + GFF1095 0.87 -2.0
408,498 - GFF1095 0.87 -0.5
408,498 - GFF1095 0.87 -1.9
408,498 - GFF1095 0.87 +1.7
408,498 - GFF1095 0.87 -1.5
408,498 - GFF1095 0.87 +1.0
408,498 - GFF1095 0.87 -1.9
408,498 - GFF1095 0.87 -0.6
408,498 - GFF1095 0.87 -1.3
408,503 + GFF1095 0.87 -2.2
408,503 + GFF1095 0.87 -0.9
408,504 - GFF1095 0.87 -2.0
408,504 - GFF1095 0.87 +1.7
408,578 + -0.5
408,578 + -0.2
408,579 - -1.5
408,579 - -2.1
408,579 - +1.1
408,579 - +2.3
408,579 - +1.2
408,726 + GFF1096 0.15 -0.2
408,727 - GFF1096 0.16 -1.0
408,727 - GFF1096 0.16 +1.6
409,143 + GFF1096 0.75 -0.3
409,143 + GFF1096 0.75 +1.9
409,143 + GFF1096 0.75 -2.0
409,143 + GFF1096 0.75 -0.5
409,143 + GFF1096 0.75 -1.7
409,143 + GFF1096 0.75 -0.0
409,143 + GFF1096 0.75 -0.3
409,143 + GFF1096 0.75 -2.7
409,143 + GFF1096 0.75 +0.5
409,143 + GFF1096 0.75 +1.7
409,143 + GFF1096 0.75 -0.6
409,143 + GFF1096 0.75 -1.1
409,143 - GFF1096 0.75 -1.1
409,144 - GFF1096 0.75 +1.9
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 -0.8
409,144 - GFF1096 0.75 -3.1
409,144 - GFF1096 0.75 -1.0
409,144 - GFF1096 0.75 +1.0
409,144 - GFF1096 0.75 -3.8
409,144 - GFF1096 0.75 -3.0
409,144 - GFF1096 0.75 -2.9
409,144 - GFF1096 0.75 -1.3
409,144 - GFF1096 0.75 -1.9
409,144 - GFF1096 0.75 +1.7
409,144 - GFF1096 0.75 -1.8
409,144 - GFF1096 0.75 -1.1
409,254 + -2.3
409,254 + +0.5
409,254 + -0.1
409,254 + +0.4
409,254 + -0.3
409,254 + -1.8
409,254 + -1.1
409,254 + -0.8
409,254 + -0.8
409,254 + -0.4
409,254 + -3.1
409,254 + -3.2
409,254 + -1.1
409,254 + -0.2
409,254 + +2.1
409,255 - -2.7
409,255 - -0.1
409,255 - -0.2
409,255 - +0.7
409,255 - +0.7
409,255 - +1.1
409,300 + -0.1
409,300 + -3.1
409,300 + -1.3
409,300 + -1.6
409,301 - -0.9
409,301 - -2.5
409,317 + +0.1
409,318 - -2.2
409,318 - +1.0
409,318 - +1.1
409,654 + GFF1097 0.44 -1.1
409,654 + GFF1097 0.44 +3.8
409,654 + GFF1097 0.44 -4.5
409,654 + GFF1097 0.44 +1.4
409,655 - GFF1097 0.44 -0.4
409,655 - GFF1097 0.44 -2.4
409,675 - GFF1097 0.47 -0.1
409,731 - GFF1097 0.55 +0.1
409,843 + GFF1097 0.71 -2.6
409,844 - GFF1097 0.72 -1.3
409,915 + GFF1097 0.82 +0.6
409,915 + GFF1097 0.82 +0.7
409,915 + GFF1097 0.82 -0.2
409,915 + GFF1097 0.82 +0.7
409,916 - GFF1097 0.82 +1.3
409,916 - GFF1097 0.82 +0.8
409,916 - GFF1097 0.82 -0.3
409,916 - GFF1097 0.82 +3.5
409,916 - GFF1097 0.82 -0.6
409,916 - GFF1097 0.82 +0.0
409,916 - GFF1097 0.82 -1.1
409,916 - GFF1097 0.82 -0.6
409,916 - GFF1097 0.82 -2.8
409,916 - GFF1097 0.82 -0.3
409,916 - GFF1097 0.82 +0.1
410,074 - -1.0

Or see this region's nucleotide sequence