Strain Fitness in Variovorax sp. SCN45 around GFF1031

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1030 and GFF1031 are separated by 84 nucleotidesGFF1031 and GFF1032 are separated by 46 nucleotidesGFF1032 and GFF1033 are separated by 132 nucleotides GFF1030 - Ferredoxin reductase, at 344,468 to 345,598 GFF1030 GFF1031 - Acetoacetate decarboxylase (EC 4.1.1.4), at 345,683 to 346,432 GFF1031 GFF1032 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 346,479 to 347,261 GFF1032 GFF1033 - Histone acetyltransferase HPA2 and related acetyltransferases, at 347,394 to 348,335 GFF1033 Position (kb) 345 346 347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 344.789 kb on + strand, within GFF1030at 344.834 kb on + strand, within GFF1030at 344.834 kb on + strand, within GFF1030at 344.834 kb on + strand, within GFF1030at 344.835 kb on - strand, within GFF1030at 344.835 kb on - strand, within GFF1030at 344.835 kb on - strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.838 kb on - strand, within GFF1030at 344.838 kb on - strand, within GFF1030at 344.838 kb on - strand, within GFF1030at 344.954 kb on + strand, within GFF1030at 344.954 kb on + strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 345.053 kb on + strand, within GFF1030at 345.053 kb on + strand, within GFF1030at 345.053 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.215 kb on + strand, within GFF1030at 345.215 kb on + strand, within GFF1030at 345.215 kb on + strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.386 kb on + strand, within GFF1030at 345.423 kb on - strand, within GFF1030at 345.605 kb on + strandat 345.605 kb on + strandat 345.606 kb on - strandat 345.606 kb on - strandat 345.606 kb on - strandat 345.632 kb on + strandat 345.632 kb on + strandat 345.632 kb on + strandat 345.633 kb on - strandat 345.633 kb on - strandat 345.756 kb on - strandat 345.791 kb on + strand, within GFF1031at 345.791 kb on + strand, within GFF1031at 345.863 kb on + strand, within GFF1031at 345.863 kb on + strand, within GFF1031at 345.863 kb on + strand, within GFF1031at 345.863 kb on + strand, within GFF1031at 345.863 kb on + strand, within GFF1031at 345.864 kb on - strand, within GFF1031at 345.864 kb on - strand, within GFF1031at 345.864 kb on - strand, within GFF1031at 345.864 kb on - strand, within GFF1031at 345.906 kb on - strand, within GFF1031at 345.906 kb on - strand, within GFF1031at 345.971 kb on + strand, within GFF1031at 345.971 kb on + strand, within GFF1031at 345.971 kb on + strand, within GFF1031at 345.971 kb on + strand, within GFF1031at 345.971 kb on + strand, within GFF1031at 345.971 kb on + strand, within GFF1031at 345.972 kb on - strand, within GFF1031at 345.972 kb on - strand, within GFF1031at 345.972 kb on - strand, within GFF1031at 345.986 kb on + strand, within GFF1031at 345.986 kb on + strand, within GFF1031at 345.986 kb on + strand, within GFF1031at 345.986 kb on + strand, within GFF1031at 345.986 kb on + strand, within GFF1031at 345.986 kb on + strand, within GFF1031at 345.986 kb on + strand, within GFF1031at 345.987 kb on - strand, within GFF1031at 345.987 kb on - strand, within GFF1031at 345.987 kb on - strand, within GFF1031at 345.987 kb on - strand, within GFF1031at 346.067 kb on + strand, within GFF1031at 346.067 kb on + strand, within GFF1031at 346.067 kb on + strand, within GFF1031at 346.068 kb on - strand, within GFF1031at 346.100 kb on + strand, within GFF1031at 346.253 kb on + strand, within GFF1031at 346.253 kb on + strand, within GFF1031at 346.254 kb on - strand, within GFF1031at 346.254 kb on - strand, within GFF1031at 346.376 kb on + strandat 346.376 kb on + strandat 346.376 kb on + strandat 346.376 kb on + strandat 346.376 kb on + strandat 346.376 kb on + strandat 346.376 kb on + strandat 346.376 kb on + strandat 346.377 kb on - strandat 346.377 kb on - strandat 346.377 kb on - strandat 346.377 kb on - strandat 346.377 kb on - strandat 346.377 kb on - strandat 346.377 kb on - strandat 346.421 kb on + strandat 346.421 kb on + strandat 346.421 kb on + strandat 346.421 kb on + strandat 346.421 kb on + strandat 346.421 kb on + strandat 346.422 kb on - strandat 346.422 kb on - strandat 346.422 kb on - strandat 346.422 kb on - strandat 346.422 kb on - strandat 346.503 kb on + strandat 346.503 kb on + strandat 346.503 kb on + strandat 346.504 kb on - strandat 346.504 kb on - strandat 346.504 kb on - strandat 346.504 kb on - strandat 346.504 kb on - strandat 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on + strand, within GFF1032at 346.863 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.864 kb on - strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.893 kb on + strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.894 kb on - strand, within GFF1032at 346.941 kb on + strand, within GFF1032at 346.941 kb on + strand, within GFF1032at 346.941 kb on + strand, within GFF1032at 346.942 kb on - strand, within GFF1032at 346.942 kb on - strand, within GFF1032at 347.315 kb on + strandat 347.316 kb on + strandat 347.316 kb on - strandat 347.316 kb on - strandat 347.395 kb on + strandat 347.395 kb on + strandat 347.395 kb on + strandat 347.395 kb on + strandat 347.395 kb on + strandat 347.395 kb on + strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strandat 347.396 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
344,789 + GFF1030 0.28 -0.9
344,834 + GFF1030 0.32 -4.2
344,834 + GFF1030 0.32 -1.8
344,834 + GFF1030 0.32 -0.2
344,835 - GFF1030 0.32 +0.2
344,835 - GFF1030 0.32 +1.5
344,835 - GFF1030 0.32 -1.3
344,837 + GFF1030 0.33 -0.8
344,837 + GFF1030 0.33 -3.1
344,837 + GFF1030 0.33 -1.1
344,837 + GFF1030 0.33 +0.8
344,837 + GFF1030 0.33 +0.7
344,837 + GFF1030 0.33 -0.5
344,837 + GFF1030 0.33 -1.7
344,838 - GFF1030 0.33 +0.1
344,838 - GFF1030 0.33 -2.6
344,838 - GFF1030 0.33 -3.7
344,954 + GFF1030 0.43 -2.5
344,954 + GFF1030 0.43 -1.1
344,955 - GFF1030 0.43 -1.9
344,955 - GFF1030 0.43 -0.9
344,955 - GFF1030 0.43 -3.1
344,955 - GFF1030 0.43 +1.7
345,053 + GFF1030 0.52 -2.4
345,053 + GFF1030 0.52 -1.7
345,053 + GFF1030 0.52 -1.6
345,092 + GFF1030 0.55 -1.0
345,092 + GFF1030 0.55 -3.3
345,092 + GFF1030 0.55 +1.0
345,092 + GFF1030 0.55 -3.2
345,092 + GFF1030 0.55 +2.1
345,092 + GFF1030 0.55 -0.3
345,092 + GFF1030 0.55 -0.9
345,093 - GFF1030 0.55 -3.8
345,093 - GFF1030 0.55 -0.9
345,093 - GFF1030 0.55 -0.7
345,093 - GFF1030 0.55 +1.4
345,093 - GFF1030 0.55 -2.3
345,215 + GFF1030 0.66 +0.4
345,215 + GFF1030 0.66 -0.9
345,215 + GFF1030 0.66 +2.0
345,216 - GFF1030 0.66 -2.9
345,216 - GFF1030 0.66 -2.1
345,216 - GFF1030 0.66 +1.0
345,216 - GFF1030 0.66 -2.2
345,216 - GFF1030 0.66 -0.6
345,386 + GFF1030 0.81 +1.6
345,423 - GFF1030 0.84 -2.8
345,605 + -3.2
345,605 + +1.2
345,606 - -0.3
345,606 - +0.5
345,606 - -1.6
345,632 + +0.1
345,632 + -1.7
345,632 + +0.1
345,633 - -3.2
345,633 - +1.5
345,756 - -0.3
345,791 + GFF1031 0.14 +1.2
345,791 + GFF1031 0.14 +0.0
345,863 + GFF1031 0.24 +0.9
345,863 + GFF1031 0.24 -3.7
345,863 + GFF1031 0.24 +1.8
345,863 + GFF1031 0.24 -0.9
345,863 + GFF1031 0.24 -0.3
345,864 - GFF1031 0.24 +1.5
345,864 - GFF1031 0.24 -3.3
345,864 - GFF1031 0.24 +3.3
345,864 - GFF1031 0.24 +1.7
345,906 - GFF1031 0.30 -2.5
345,906 - GFF1031 0.30 -1.0
345,971 + GFF1031 0.38 -1.5
345,971 + GFF1031 0.38 -1.3
345,971 + GFF1031 0.38 +0.1
345,971 + GFF1031 0.38 -1.5
345,971 + GFF1031 0.38 +1.0
345,971 + GFF1031 0.38 -0.3
345,972 - GFF1031 0.39 +1.1
345,972 - GFF1031 0.39 -1.8
345,972 - GFF1031 0.39 -2.8
345,986 + GFF1031 0.40 -0.7
345,986 + GFF1031 0.40 +1.2
345,986 + GFF1031 0.40 -2.5
345,986 + GFF1031 0.40 -1.1
345,986 + GFF1031 0.40 +0.9
345,986 + GFF1031 0.40 -0.3
345,986 + GFF1031 0.40 +2.6
345,987 - GFF1031 0.41 +0.7
345,987 - GFF1031 0.41 +0.1
345,987 - GFF1031 0.41 -0.5
345,987 - GFF1031 0.41 -0.6
346,067 + GFF1031 0.51 +0.1
346,067 + GFF1031 0.51 -2.1
346,067 + GFF1031 0.51 -2.2
346,068 - GFF1031 0.51 -1.3
346,100 + GFF1031 0.56 +1.8
346,253 + GFF1031 0.76 -1.4
346,253 + GFF1031 0.76 +0.2
346,254 - GFF1031 0.76 +1.4
346,254 - GFF1031 0.76 -0.1
346,376 + -1.2
346,376 + -0.1
346,376 + -0.1
346,376 + -2.0
346,376 + -3.5
346,376 + -1.8
346,376 + +0.6
346,376 + +0.5
346,377 - -0.3
346,377 - -1.4
346,377 - -0.9
346,377 - +1.3
346,377 - +0.2
346,377 - +3.9
346,377 - -3.0
346,421 + -1.8
346,421 + -0.8
346,421 + -0.6
346,421 + -1.5
346,421 + -0.6
346,421 + -3.0
346,422 - +0.7
346,422 - -1.0
346,422 - +1.4
346,422 - +0.3
346,422 - -0.3
346,503 + +1.3
346,503 + -2.7
346,503 + -1.5
346,504 - +0.0
346,504 - -1.9
346,504 - -0.8
346,504 - -1.5
346,504 - -0.7
346,863 + GFF1032 0.49 -1.9
346,863 + GFF1032 0.49 -3.3
346,863 + GFF1032 0.49 +0.1
346,863 + GFF1032 0.49 -0.9
346,863 + GFF1032 0.49 -3.2
346,863 + GFF1032 0.49 -0.0
346,863 + GFF1032 0.49 -2.8
346,863 + GFF1032 0.49 +1.0
346,863 + GFF1032 0.49 -1.3
346,863 + GFF1032 0.49 +0.8
346,863 + GFF1032 0.49 +1.2
346,863 + GFF1032 0.49 +0.8
346,863 + GFF1032 0.49 -1.1
346,863 + GFF1032 0.49 -2.3
346,863 + GFF1032 0.49 +3.3
346,863 + GFF1032 0.49 -1.4
346,863 + GFF1032 0.49 +0.7
346,863 + GFF1032 0.49 -1.9
346,863 + GFF1032 0.49 -0.3
346,863 + GFF1032 0.49 +0.1
346,863 + GFF1032 0.49 +0.3
346,863 + GFF1032 0.49 +0.1
346,863 + GFF1032 0.49 -1.3
346,863 + GFF1032 0.49 -1.8
346,863 + GFF1032 0.49 -0.2
346,863 + GFF1032 0.49 -2.1
346,863 + GFF1032 0.49 -0.9
346,863 + GFF1032 0.49 +0.9
346,863 + GFF1032 0.49 -2.1
346,863 + GFF1032 0.49 +0.2
346,863 - GFF1032 0.49 -0.6
346,864 - GFF1032 0.49 -1.1
346,864 - GFF1032 0.49 -0.3
346,864 - GFF1032 0.49 +1.2
346,864 - GFF1032 0.49 -1.5
346,864 - GFF1032 0.49 -2.1
346,864 - GFF1032 0.49 +0.6
346,864 - GFF1032 0.49 -0.0
346,864 - GFF1032 0.49 -0.2
346,864 - GFF1032 0.49 -0.8
346,864 - GFF1032 0.49 +0.7
346,864 - GFF1032 0.49 -1.9
346,864 - GFF1032 0.49 -2.1
346,864 - GFF1032 0.49 +2.5
346,864 - GFF1032 0.49 -1.0
346,864 - GFF1032 0.49 -2.8
346,864 - GFF1032 0.49 -0.4
346,864 - GFF1032 0.49 -1.5
346,864 - GFF1032 0.49 -0.5
346,864 - GFF1032 0.49 -1.3
346,864 - GFF1032 0.49 -1.2
346,864 - GFF1032 0.49 +2.1
346,864 - GFF1032 0.49 -2.0
346,864 - GFF1032 0.49 +1.0
346,864 - GFF1032 0.49 +0.9
346,864 - GFF1032 0.49 +1.7
346,893 + GFF1032 0.53 -0.1
346,893 + GFF1032 0.53 -1.1
346,893 + GFF1032 0.53 -2.8
346,893 + GFF1032 0.53 -0.4
346,893 + GFF1032 0.53 +0.1
346,893 + GFF1032 0.53 -0.5
346,893 + GFF1032 0.53 -2.5
346,893 + GFF1032 0.53 +0.8
346,893 + GFF1032 0.53 +0.9
346,894 - GFF1032 0.53 +0.6
346,894 - GFF1032 0.53 -3.5
346,894 - GFF1032 0.53 -1.3
346,894 - GFF1032 0.53 +1.4
346,894 - GFF1032 0.53 -0.5
346,894 - GFF1032 0.53 -2.0
346,894 - GFF1032 0.53 +0.0
346,894 - GFF1032 0.53 -0.5
346,941 + GFF1032 0.59 +0.4
346,941 + GFF1032 0.59 -0.1
346,941 + GFF1032 0.59 -1.8
346,942 - GFF1032 0.59 +1.0
346,942 - GFF1032 0.59 +0.3
347,315 + -0.9
347,316 + -0.1
347,316 - +0.4
347,316 - -0.2
347,395 + -1.3
347,395 + -2.1
347,395 + -1.0
347,395 + -0.1
347,395 + -0.3
347,395 + +0.7
347,396 - +2.1
347,396 - +1.1
347,396 - +0.1
347,396 - +1.5
347,396 - -0.1
347,396 - -1.5
347,396 - -3.0
347,396 - +1.3
347,396 - +1.1
347,396 - +1.6
347,396 - +1.1
347,396 - -1.8
347,396 - -2.5

Or see this region's nucleotide sequence