Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF995 and GFF996 are separated by 16 nucleotides GFF996 and GFF997 are separated by 5 nucleotides GFF997 and GFF998 are separated by 7 nucleotides
GFF995 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3), at 313,956 to 315,230
GFF995
GFF996 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 315,247 to 316,557
GFF996
GFF997 - UPF0070 protein YfgM, at 316,563 to 317,255
GFF997
GFF998 - Outer membrane beta-barrel assembly protein BamB, at 317,263 to 318,405
GFF998
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.533 kb on - strand at 316.533 kb on - strand at 316.533 kb on - strand at 316.830 kb on + strand, within GFF997 at 316.830 kb on + strand, within GFF997 at 316.830 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.115 kb on + strand, within GFF997 at 317.154 kb on + strand, within GFF997
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 316,532 + +2.0 316,532 + -0.2 316,532 + +2.3 316,532 + -0.4 316,532 + +0.2 316,532 + +1.9 316,532 + +0.7 316,532 + -2.8 316,532 + -1.8 316,532 + +1.3 316,533 - +1.7 316,533 - +1.6 316,533 - -2.5 316,830 + GFF997 0.39 +0.4 316,830 + GFF997 0.39 +1.0 316,830 + GFF997 0.39 -1.3 316,941 + GFF997 0.55 -0.3 316,941 + GFF997 0.55 -0.0 316,941 + GFF997 0.55 -0.0 316,941 + GFF997 0.55 -0.0 316,941 + GFF997 0.55 -0.3 317,076 + GFF997 0.74 -2.1 317,076 + GFF997 0.74 +1.0 317,076 + GFF997 0.74 -0.3 317,076 + GFF997 0.74 -0.0 317,076 + GFF997 0.74 +1.0 317,076 + GFF997 0.74 +2.0 317,076 + GFF997 0.74 -1.0 317,076 + GFF997 0.74 -1.0 317,076 + GFF997 0.74 +1.0 317,076 + GFF997 0.74 -2.1 317,076 + GFF997 0.74 +0.5 317,076 + GFF997 0.74 -0.3 317,076 + GFF997 0.74 -0.3 317,115 + GFF997 0.80 +0.4 317,154 + GFF997 0.85 -1.3
Or see this region's nucleotide sequence