Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF853 and GFF854 overlap by 4 nucleotides GFF854 and GFF855 are separated by 31 nucleotides GFF855 and GFF856 are separated by 9 nucleotides
GFF853 - hypothetical protein, at 161,111 to 162,307
GFF853
GFF854 - hypothetical protein, at 162,304 to 162,867
GFF854
GFF855 - Palmitoyl-CoA hydrolase( EC:3.1.2.2 ), at 162,899 to 163,588
GFF855
GFF856 - no description, at 163,598 to 164,095
GFF856
Position (kb) 162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 161.308 kb on - strand, within GFF853 at 161.398 kb on - strand, within GFF853 at 161.398 kb on - strand, within GFF853 at 161.652 kb on + strand, within GFF853 at 161.761 kb on - strand, within GFF853 at 161.761 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 162.102 kb on + strand, within GFF853 at 162.389 kb on + strand, within GFF854 at 162.465 kb on - strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.883 kb on + strand at 162.883 kb on + strand at 162.883 kb on + strand at 162.884 kb on - strand at 163.254 kb on + strand, within GFF855 at 163.254 kb on + strand, within GFF855 at 163.255 kb on - strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.348 kb on - strand, within GFF855 at 163.348 kb on - strand, within GFF855 at 163.540 kb on - strand at 163.560 kb on + strand at 163.599 kb on + strand at 163.600 kb on - strand at 163.728 kb on + strand, within GFF856 at 163.729 kb on - strand, within GFF856 at 163.790 kb on - strand, within GFF856
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 161,308 - GFF853 0.16 -0.8 161,398 - GFF853 0.24 +0.5 161,398 - GFF853 0.24 -0.3 161,652 + GFF853 0.45 +1.2 161,761 - GFF853 0.54 +1.6 161,761 - GFF853 0.54 +0.1 161,827 - GFF853 0.60 -1.1 161,827 - GFF853 0.60 +0.6 161,827 - GFF853 0.60 -2.6 161,827 - GFF853 0.60 +0.2 161,827 - GFF853 0.60 -0.3 162,102 + GFF853 0.83 +1.1 162,389 + GFF854 0.15 -1.7 162,465 - GFF854 0.29 -1.5 162,621 + GFF854 0.56 -2.5 162,621 + GFF854 0.56 -0.6 162,791 + GFF854 0.86 -1.7 162,791 + GFF854 0.86 +1.7 162,883 + -1.0 162,883 + -1.3 162,883 + -2.0 162,884 - +0.8 163,254 + GFF855 0.51 -0.3 163,254 + GFF855 0.51 -3.2 163,255 - GFF855 0.52 -0.9 163,347 + GFF855 0.65 -0.3 163,347 + GFF855 0.65 -0.5 163,347 + GFF855 0.65 -1.1 163,347 + GFF855 0.65 +0.5 163,347 + GFF855 0.65 +0.2 163,348 - GFF855 0.65 -0.7 163,348 - GFF855 0.65 +1.4 163,540 - +0.4 163,560 + -0.5 163,599 + +0.7 163,600 - -0.4 163,728 + GFF856 0.26 -2.3 163,729 - GFF856 0.26 -1.6 163,790 - GFF856 0.39 -2.6
Or see this region's nucleotide sequence