Strain Fitness in Variovorax sp. SCN45 around GFF83

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF81 and GFF82 are separated by 8 nucleotidesGFF82 and GFF83 overlap by 4 nucleotidesGFF83 and GFF84 are separated by 112 nucleotidesGFF84 and GFF85 are separated by 131 nucleotides GFF81 - Bll6900 protein, at 98,293 to 98,895 GFF81 GFF82 - Alkylhydroperoxidase AhpD domain protein, at 98,904 to 99,557 GFF82 GFF83 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 99,554 to 100,615 GFF83 GFF84 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 100,728 to 101,444 GFF84 GFF85 - Transcriptional regulator, LysR family, at 101,576 to 102,475 GFF85 Position (kb) 99 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 98.582 kb on + strand, within GFF81at 98.582 kb on + strand, within GFF81at 98.582 kb on + strand, within GFF81at 98.660 kb on + strand, within GFF81at 98.660 kb on + strand, within GFF81at 98.660 kb on + strand, within GFF81at 98.661 kb on - strand, within GFF81at 98.661 kb on - strand, within GFF81at 98.661 kb on - strand, within GFF81at 98.729 kb on + strand, within GFF81at 98.730 kb on - strand, within GFF81at 98.867 kb on + strandat 98.867 kb on + strandat 98.868 kb on - strandat 99.151 kb on + strand, within GFF82at 99.152 kb on - strand, within GFF82at 99.152 kb on - strand, within GFF82at 99.152 kb on - strand, within GFF82at 99.196 kb on + strand, within GFF82at 99.196 kb on + strand, within GFF82at 99.196 kb on + strand, within GFF82at 99.196 kb on + strand, within GFF82at 99.197 kb on - strand, within GFF82at 99.295 kb on + strand, within GFF82at 99.295 kb on + strand, within GFF82at 99.295 kb on + strand, within GFF82at 99.296 kb on - strand, within GFF82at 99.296 kb on - strand, within GFF82at 99.296 kb on - strand, within GFF82at 99.412 kb on + strand, within GFF82at 99.412 kb on + strand, within GFF82at 99.412 kb on + strand, within GFF82at 99.412 kb on + strand, within GFF82at 99.413 kb on - strand, within GFF82at 99.413 kb on - strand, within GFF82at 99.413 kb on - strand, within GFF82at 99.413 kb on - strand, within GFF82at 99.960 kb on + strand, within GFF83at 100.134 kb on + strand, within GFF83at 100.135 kb on - strand, within GFF83at 100.404 kb on + strand, within GFF83at 100.404 kb on + strand, within GFF83at 100.404 kb on + strand, within GFF83at 100.404 kb on + strand, within GFF83at 100.404 kb on + strand, within GFF83at 100.404 kb on + strand, within GFF83at 100.405 kb on - strand, within GFF83at 100.405 kb on - strand, within GFF83at 100.405 kb on - strand, within GFF83at 100.695 kb on + strandat 100.695 kb on + strandat 100.695 kb on + strandat 100.695 kb on + strandat 100.696 kb on - strandat 100.757 kb on - strandat 101.110 kb on + strand, within GFF84at 101.110 kb on + strand, within GFF84at 101.111 kb on - strand, within GFF84at 101.420 kb on - strandat 101.470 kb on + strandat 101.470 kb on + strandat 101.471 kb on - strandat 101.486 kb on + strandat 101.486 kb on + strandat 101.487 kb on - strandat 101.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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98,582 + GFF81 0.48 -0.6
98,582 + GFF81 0.48 +0.8
98,582 + GFF81 0.48 -1.3
98,660 + GFF81 0.61 +1.0
98,660 + GFF81 0.61 -1.6
98,660 + GFF81 0.61 -0.8
98,661 - GFF81 0.61 -0.6
98,661 - GFF81 0.61 -2.5
98,661 - GFF81 0.61 +1.8
98,729 + GFF81 0.72 -2.6
98,730 - GFF81 0.72 +0.7
98,867 + -2.1
98,867 + -2.5
98,868 - -0.6
99,151 + GFF82 0.38 +1.6
99,152 - GFF82 0.38 -0.8
99,152 - GFF82 0.38 +0.9
99,152 - GFF82 0.38 -0.4
99,196 + GFF82 0.45 -0.8
99,196 + GFF82 0.45 +0.8
99,196 + GFF82 0.45 -1.2
99,196 + GFF82 0.45 +1.4
99,197 - GFF82 0.45 +0.6
99,295 + GFF82 0.60 +0.8
99,295 + GFF82 0.60 -3.2
99,295 + GFF82 0.60 +1.1
99,296 - GFF82 0.60 -1.1
99,296 - GFF82 0.60 -0.8
99,296 - GFF82 0.60 +0.0
99,412 + GFF82 0.78 -0.7
99,412 + GFF82 0.78 -1.4
99,412 + GFF82 0.78 -0.4
99,412 + GFF82 0.78 -0.8
99,413 - GFF82 0.78 -2.4
99,413 - GFF82 0.78 +1.1
99,413 - GFF82 0.78 +0.3
99,413 - GFF82 0.78 -2.2
99,960 + GFF83 0.38 -0.4
100,134 + GFF83 0.55 -0.8
100,135 - GFF83 0.55 -2.5
100,404 + GFF83 0.80 +0.2
100,404 + GFF83 0.80 +0.9
100,404 + GFF83 0.80 -2.5
100,404 + GFF83 0.80 +0.8
100,404 + GFF83 0.80 +0.8
100,404 + GFF83 0.80 -2.9
100,405 - GFF83 0.80 +0.2
100,405 - GFF83 0.80 -0.5
100,405 - GFF83 0.80 +0.2
100,695 + -0.8
100,695 + -2.5
100,695 + -1.6
100,695 + -0.4
100,696 - -1.8
100,757 - -0.8
101,110 + GFF84 0.53 -0.8
101,110 + GFF84 0.53 +1.7
101,111 - GFF84 0.53 -1.2
101,420 - -0.1
101,470 + -1.2
101,470 + -1.6
101,471 - +0.6
101,486 + -2.6
101,486 + +1.0
101,487 - -1.4
101,487 - +0.8

Or see this region's nucleotide sequence