Strain Fitness in Variovorax sp. SCN45 around GFF814

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF813 and GFF814 are separated by 109 nucleotidesGFF814 and GFF815 overlap by 4 nucleotidesGFF815 and GFF816 are separated by 16 nucleotides GFF813 - Transcriptional regulator PA0877, LysR family, at 118,338 to 119,282 GFF813 GFF814 - BUG/TctC family periplasmic protein, at 119,392 to 120,372 GFF814 GFF815 - COGs COG3777, at 120,369 to 121,286 GFF815 GFF816 - L-carnitine dehydratase/bile acid-inducible protein F, at 121,303 to 122,484 GFF816 Position (kb) 119 120 121Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 118.399 kb on + strandat 118.400 kb on - strandat 118.400 kb on - strandat 118.400 kb on - strandat 118.435 kb on + strand, within GFF813at 118.435 kb on + strand, within GFF813at 118.435 kb on + strand, within GFF813at 118.435 kb on + strand, within GFF813at 118.435 kb on + strand, within GFF813at 118.435 kb on + strand, within GFF813at 118.435 kb on + strand, within GFF813at 118.436 kb on - strand, within GFF813at 118.436 kb on - strand, within GFF813at 118.436 kb on - strand, within GFF813at 118.436 kb on - strand, within GFF813at 118.436 kb on - strand, within GFF813at 118.436 kb on - strand, within GFF813at 118.471 kb on + strand, within GFF813at 118.471 kb on + strand, within GFF813at 118.471 kb on + strand, within GFF813at 118.471 kb on + strand, within GFF813at 118.472 kb on - strand, within GFF813at 118.472 kb on - strand, within GFF813at 118.472 kb on - strand, within GFF813at 118.472 kb on - strand, within GFF813at 118.869 kb on + strand, within GFF813at 118.870 kb on - strand, within GFF813at 119.024 kb on - strand, within GFF813at 119.293 kb on + strandat 119.293 kb on + strandat 119.293 kb on + strandat 119.293 kb on + strandat 119.293 kb on + strandat 119.293 kb on + strandat 119.293 kb on + strandat 119.293 kb on + strandat 119.294 kb on - strandat 119.294 kb on - strandat 119.294 kb on - strandat 119.294 kb on - strandat 119.294 kb on - strandat 119.294 kb on - strandat 119.294 kb on - strandat 119.310 kb on + strandat 119.310 kb on + strandat 119.311 kb on - strandat 119.391 kb on + strandat 119.391 kb on + strandat 119.391 kb on + strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.394 kb on - strandat 119.473 kb on + strandat 119.659 kb on + strand, within GFF814at 119.659 kb on + strand, within GFF814at 119.660 kb on - strand, within GFF814at 119.660 kb on - strand, within GFF814at 119.660 kb on - strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.711 kb on - strand, within GFF814at 119.711 kb on - strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 120.133 kb on + strand, within GFF814at 120.133 kb on + strand, within GFF814at 120.134 kb on - strand, within GFF814at 120.134 kb on - strand, within GFF814at 120.134 kb on - strand, within GFF814at 120.982 kb on - strand, within GFF815at 121.018 kb on - strand, within GFF815at 121.018 kb on - strand, within GFF815at 121.030 kb on - strand, within GFF815at 121.030 kb on - strand, within GFF815at 121.293 kb on + strandat 121.293 kb on + strandat 121.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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118,399 + +4.3
118,400 - -1.4
118,400 - -0.3
118,400 - +0.9
118,435 + GFF813 0.10 -0.5
118,435 + GFF813 0.10 -0.5
118,435 + GFF813 0.10 -1.1
118,435 + GFF813 0.10 -1.4
118,435 + GFF813 0.10 +0.1
118,435 + GFF813 0.10 -0.3
118,435 + GFF813 0.10 -0.5
118,436 - GFF813 0.10 +0.7
118,436 - GFF813 0.10 -1.2
118,436 - GFF813 0.10 -1.7
118,436 - GFF813 0.10 +0.1
118,436 - GFF813 0.10 -0.7
118,436 - GFF813 0.10 -1.1
118,471 + GFF813 0.14 +1.1
118,471 + GFF813 0.14 +0.1
118,471 + GFF813 0.14 +1.2
118,471 + GFF813 0.14 -3.0
118,472 - GFF813 0.14 -1.8
118,472 - GFF813 0.14 -1.5
118,472 - GFF813 0.14 -2.2
118,472 - GFF813 0.14 -0.3
118,869 + GFF813 0.56 -1.5
118,870 - GFF813 0.56 -2.8
119,024 - GFF813 0.73 -3.2
119,293 + -1.0
119,293 + +0.8
119,293 + -0.8
119,293 + -1.3
119,293 + -1.1
119,293 + -1.7
119,293 + -3.9
119,293 + -0.5
119,294 - -0.2
119,294 - -0.8
119,294 - -0.4
119,294 - +0.5
119,294 - +0.4
119,294 - -0.7
119,294 - -0.9
119,310 + -1.6
119,310 + +0.8
119,311 - +0.3
119,391 + -2.4
119,391 + +0.5
119,391 + +1.1
119,392 - +0.5
119,392 - -1.0
119,392 - +1.2
119,392 - -0.3
119,392 - -0.5
119,394 - +0.4
119,473 + -0.0
119,659 + GFF814 0.27 -1.0
119,659 + GFF814 0.27 +0.5
119,660 - GFF814 0.27 -3.8
119,660 - GFF814 0.27 -1.5
119,660 - GFF814 0.27 +0.3
119,710 + GFF814 0.32 +1.0
119,710 + GFF814 0.32 +0.6
119,710 + GFF814 0.32 +0.1
119,710 + GFF814 0.32 +2.0
119,710 + GFF814 0.32 -0.7
119,711 - GFF814 0.33 -1.9
119,711 - GFF814 0.33 -2.7
119,857 + GFF814 0.47 -0.1
119,857 + GFF814 0.47 -1.9
119,857 + GFF814 0.47 -0.5
119,857 + GFF814 0.47 +1.0
119,858 - GFF814 0.48 +2.1
119,858 - GFF814 0.48 -1.9
119,858 - GFF814 0.48 +2.1
119,858 - GFF814 0.48 +2.1
119,858 - GFF814 0.48 +0.5
119,863 + GFF814 0.48 -0.3
119,863 + GFF814 0.48 +1.1
119,863 + GFF814 0.48 -0.1
119,863 + GFF814 0.48 -2.0
119,863 + GFF814 0.48 +1.2
119,863 + GFF814 0.48 -2.3
119,864 - GFF814 0.48 +0.0
119,864 - GFF814 0.48 +1.0
119,864 - GFF814 0.48 -0.2
119,864 - GFF814 0.48 -1.1
119,864 - GFF814 0.48 +1.0
119,950 + GFF814 0.57 +0.5
119,950 + GFF814 0.57 +0.4
119,950 + GFF814 0.57 +0.5
119,950 + GFF814 0.57 -2.3
119,950 + GFF814 0.57 +0.7
119,950 + GFF814 0.57 -0.8
119,950 + GFF814 0.57 +1.2
119,950 + GFF814 0.57 -0.1
119,950 + GFF814 0.57 -0.2
119,951 - GFF814 0.57 -1.9
119,951 - GFF814 0.57 -1.4
119,951 - GFF814 0.57 -0.5
119,951 - GFF814 0.57 -0.2
119,951 - GFF814 0.57 +0.4
120,133 + GFF814 0.76 -3.4
120,133 + GFF814 0.76 -1.4
120,134 - GFF814 0.76 -0.3
120,134 - GFF814 0.76 +5.1
120,134 - GFF814 0.76 -3.7
120,982 - GFF815 0.67 -0.3
121,018 - GFF815 0.71 +0.1
121,018 - GFF815 0.71 -1.1
121,030 - GFF815 0.72 -2.6
121,030 - GFF815 0.72 +0.3
121,293 + +0.5
121,293 + -2.6
121,294 - -0.5

Or see this region's nucleotide sequence