Strain Fitness in Variovorax sp. SCN45 around GFF7277

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
24,911	+				+0.5
24,912	-				-2.9
25,020	+		GFF7276	0.22	+1.5
25,443	+				+0.9
25,443	+				+0.1
25,444	-				-0.0
25,578	-				-0.0
25,596	-				-2.0
25,645	+				-0.1
25,646	-				-2.4
25,667	+				-1.4
25,667	+				+0.5
25,667	+				-1.5
25,667	+				-0.5
25,668	-				+3.5
25,668	-				+2.1
25,784	+				+1.5
25,784	+				+0.8
25,784	+				+0.9
25,785	-				-2.0
25,785	-				+0.5
25,785	-				-2.0
25,785	-				-2.7
25,835	+				-3.0
25,973	+		GFF7277	0.11	+1.0
25,974	-		GFF7277	0.11	-0.5
25,974	-		GFF7277	0.11	-0.1
25,974	-		GFF7277	0.11	-0.2
26,300	-		GFF7277	0.51	-3.8
26,724	-				-0.7
27,057	-		GFF7278	0.25	+2.5
27,057	-		GFF7278	0.25	+0.8
27,530	+		GFF7278	0.56	-0.0
27,530	+		GFF7278	0.56	+0.3
27,617	+		GFF7278	0.62	-0.8
27,618	-		GFF7278	0.62	+0.2
27,618	-		GFF7278	0.62	-1.1