Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7177 and GFF7178 are separated by 14 nucleotides GFF7178 and GFF7179 overlap by 4 nucleotides GFF7179 and GFF7180 are separated by 346 nucleotides
GFF7177 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B, at 41,809 to 42,189
GFF7177
GFF7178 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 42,204 to 42,914
GFF7178
GFF7179 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 42,911 to 44,308
GFF7179
GFF7180 - no description, at 44,655 to 45,350
GFF7180
Position (kb) 42
43
44
45 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.413 kb on + strand, within GFF7178 at 42.723 kb on + strand, within GFF7178 at 42.750 kb on + strand, within GFF7178 at 42.751 kb on - strand, within GFF7178 at 42.849 kb on + strand at 42.849 kb on + strand at 42.849 kb on + strand at 42.850 kb on - strand at 42.850 kb on - strand at 42.850 kb on - strand at 42.938 kb on + strand at 42.939 kb on - strand at 42.939 kb on - strand at 42.939 kb on - strand at 42.939 kb on - strand at 42.939 kb on - strand at 42.939 kb on - strand at 43.043 kb on + strand at 43.044 kb on - strand at 43.044 kb on - strand at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.058 kb on + strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.059 kb on - strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.064 kb on + strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.065 kb on - strand, within GFF7179 at 43.068 kb on - strand, within GFF7179 at 43.068 kb on - strand, within GFF7179 at 43.068 kb on - strand, within GFF7179 at 43.547 kb on + strand, within GFF7179 at 43.548 kb on - strand, within GFF7179 at 43.607 kb on + strand, within GFF7179 at 43.607 kb on + strand, within GFF7179 at 43.607 kb on + strand, within GFF7179 at 43.607 kb on + strand, within GFF7179 at 43.608 kb on - strand, within GFF7179 at 43.608 kb on - strand, within GFF7179 at 43.608 kb on - strand, within GFF7179 at 43.608 kb on - strand, within GFF7179 at 43.608 kb on - strand, within GFF7179 at 43.608 kb on - strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.610 kb on + strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.611 kb on - strand, within GFF7179 at 43.652 kb on + strand, within GFF7179 at 43.725 kb on - strand, within GFF7179 at 43.790 kb on + strand, within GFF7179 at 43.790 kb on + strand, within GFF7179 at 43.790 kb on + strand, within GFF7179 at 43.790 kb on + strand, within GFF7179 at 43.791 kb on - strand, within GFF7179 at 43.791 kb on - strand, within GFF7179 at 43.791 kb on - strand, within GFF7179 at 43.791 kb on - strand, within GFF7179 at 43.964 kb on + strand, within GFF7179 at 43.965 kb on - strand, within GFF7179 at 43.965 kb on - strand, within GFF7179 at 43.965 kb on - strand, within GFF7179 at 43.974 kb on + strand, within GFF7179 at 43.976 kb on + strand, within GFF7179 at 43.976 kb on + strand, within GFF7179 at 43.976 kb on + strand, within GFF7179 at 43.976 kb on + strand, within GFF7179 at 43.976 kb on + strand, within GFF7179 at 43.976 kb on + strand, within GFF7179 at 43.976 kb on + strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 43.977 kb on - strand, within GFF7179 at 44.030 kb on + strand, within GFF7179 at 44.031 kb on - strand, within GFF7179 at 44.031 kb on - strand, within GFF7179 at 44.031 kb on - strand, within GFF7179 at 44.156 kb on + strand, within GFF7179 at 44.156 kb on + strand, within GFF7179 at 44.156 kb on + strand, within GFF7179 at 44.156 kb on + strand, within GFF7179 at 44.156 kb on + strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.157 kb on - strand, within GFF7179 at 44.404 kb on + strand at 44.404 kb on + strand at 44.404 kb on + strand at 44.405 kb on - strand at 44.405 kb on - strand at 44.410 kb on + strand at 44.410 kb on + strand at 44.410 kb on + strand at 44.411 kb on - strand at 44.411 kb on - strand at 44.411 kb on - strand at 44.411 kb on - strand at 44.606 kb on - strand at 44.617 kb on + strand at 44.617 kb on + strand at 44.618 kb on - strand at 44.641 kb on + strand at 44.641 kb on + strand at 44.641 kb on + strand at 44.641 kb on + strand at 44.641 kb on + strand at 44.641 kb on + strand at 44.642 kb on - strand at 44.642 kb on - strand at 44.642 kb on - strand at 44.642 kb on - strand at 44.704 kb on + strand at 44.705 kb on - strand at 45.135 kb on + strand, within GFF7180 at 45.136 kb on - strand, within GFF7180 at 45.296 kb on + strand at 45.296 kb on + strand at 45.296 kb on + strand at 45.296 kb on + strand at 45.297 kb on - strand at 45.297 kb on - strand at 45.297 kb on - strand at 45.297 kb on - strand at 45.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 42,064 + GFF7177 0.67 -2.3 42,064 + GFF7177 0.67 -1.6 42,064 + GFF7177 0.67 -2.2 42,064 + GFF7177 0.67 +2.0 42,064 + GFF7177 0.67 +2.0 42,064 + GFF7177 0.67 -1.1 42,064 + GFF7177 0.67 -1.7 42,064 + GFF7177 0.67 -3.9 42,065 - GFF7177 0.67 -0.9 42,065 - GFF7177 0.67 +1.9 42,065 - GFF7177 0.67 +0.6 42,065 - GFF7177 0.67 +0.7 42,065 - GFF7177 0.67 -1.9 42,065 - GFF7177 0.67 -1.3 42,065 - GFF7177 0.67 -0.7 42,065 - GFF7177 0.67 +1.3 42,065 - GFF7177 0.67 -2.7 42,065 - GFF7177 0.67 -1.8 42,065 - GFF7177 0.67 -1.2 42,413 + GFF7178 0.29 +2.4 42,723 + GFF7178 0.73 +1.6 42,750 + GFF7178 0.77 -0.2 42,751 - GFF7178 0.77 -0.4 42,849 + -2.6 42,849 + +0.2 42,849 + +2.3 42,850 - +0.3 42,850 - -0.6 42,850 - -0.4 42,938 + -0.7 42,939 - -2.1 42,939 - +0.4 42,939 - -1.1 42,939 - -0.4 42,939 - +1.2 42,939 - -2.1 43,043 + +0.0 43,044 - +2.2 43,044 - -2.7 43,058 + GFF7179 0.11 +1.8 43,058 + GFF7179 0.11 -1.5 43,058 + GFF7179 0.11 +0.3 43,058 + GFF7179 0.11 -1.6 43,058 + GFF7179 0.11 -0.8 43,058 + GFF7179 0.11 -3.0 43,058 + GFF7179 0.11 -2.1 43,058 + GFF7179 0.11 -3.0 43,058 + GFF7179 0.11 +1.5 43,058 + GFF7179 0.11 +0.2 43,058 + GFF7179 0.11 -3.1 43,058 + GFF7179 0.11 -1.0 43,058 + GFF7179 0.11 -3.0 43,058 + GFF7179 0.11 -0.3 43,058 + GFF7179 0.11 -2.1 43,058 + GFF7179 0.11 -0.1 43,058 + GFF7179 0.11 -2.8 43,058 + GFF7179 0.11 -3.9 43,058 + GFF7179 0.11 +0.1 43,059 - GFF7179 0.11 +0.3 43,059 - GFF7179 0.11 -1.0 43,059 - GFF7179 0.11 -1.5 43,059 - GFF7179 0.11 -0.3 43,059 - GFF7179 0.11 +0.5 43,059 - GFF7179 0.11 -0.2 43,059 - GFF7179 0.11 -0.9 43,059 - GFF7179 0.11 +0.1 43,059 - GFF7179 0.11 -1.6 43,059 - GFF7179 0.11 -2.3 43,059 - GFF7179 0.11 +0.3 43,059 - GFF7179 0.11 -1.6 43,059 - GFF7179 0.11 -0.7 43,064 + GFF7179 0.11 +0.9 43,064 + GFF7179 0.11 -3.1 43,064 + GFF7179 0.11 -3.6 43,064 + GFF7179 0.11 -1.4 43,064 + GFF7179 0.11 -1.4 43,064 + GFF7179 0.11 +0.8 43,064 + GFF7179 0.11 -2.4 43,064 + GFF7179 0.11 -1.2 43,064 + GFF7179 0.11 -0.5 43,064 + GFF7179 0.11 -0.4 43,064 + GFF7179 0.11 +0.7 43,065 - GFF7179 0.11 -1.7 43,065 - GFF7179 0.11 -1.4 43,065 - GFF7179 0.11 -2.3 43,065 - GFF7179 0.11 -0.4 43,065 - GFF7179 0.11 -4.5 43,065 - GFF7179 0.11 -2.6 43,065 - GFF7179 0.11 -1.7 43,065 - GFF7179 0.11 +1.3 43,065 - GFF7179 0.11 +3.9 43,065 - GFF7179 0.11 -1.4 43,065 - GFF7179 0.11 -3.1 43,065 - GFF7179 0.11 -1.9 43,068 - GFF7179 0.11 -4.2 43,068 - GFF7179 0.11 -2.1 43,068 - GFF7179 0.11 +0.6 43,547 + GFF7179 0.45 +0.6 43,548 - GFF7179 0.46 +0.7 43,607 + GFF7179 0.50 +0.3 43,607 + GFF7179 0.50 -1.2 43,607 + GFF7179 0.50 +0.2 43,607 + GFF7179 0.50 +0.6 43,608 - GFF7179 0.50 -0.1 43,608 - GFF7179 0.50 -2.3 43,608 - GFF7179 0.50 -1.2 43,608 - GFF7179 0.50 -2.4 43,608 - GFF7179 0.50 -0.1 43,608 - GFF7179 0.50 +1.2 43,610 + GFF7179 0.50 +0.9 43,610 + GFF7179 0.50 -0.4 43,610 + GFF7179 0.50 -0.4 43,610 + GFF7179 0.50 -1.7 43,610 + GFF7179 0.50 -3.5 43,610 + GFF7179 0.50 -2.1 43,610 + GFF7179 0.50 -1.1 43,610 + GFF7179 0.50 +1.2 43,610 + GFF7179 0.50 -0.6 43,611 - GFF7179 0.50 +1.5 43,611 - GFF7179 0.50 -1.7 43,611 - GFF7179 0.50 -1.7 43,611 - GFF7179 0.50 -2.5 43,611 - GFF7179 0.50 -0.7 43,611 - GFF7179 0.50 +0.6 43,611 - GFF7179 0.50 +1.0 43,611 - GFF7179 0.50 +0.6 43,652 + GFF7179 0.53 +0.0 43,725 - GFF7179 0.58 -0.9 43,790 + GFF7179 0.63 -1.0 43,790 + GFF7179 0.63 +0.4 43,790 + GFF7179 0.63 +2.1 43,790 + GFF7179 0.63 -0.9 43,791 - GFF7179 0.63 -0.1 43,791 - GFF7179 0.63 +0.3 43,791 - GFF7179 0.63 -0.6 43,791 - GFF7179 0.63 -2.1 43,964 + GFF7179 0.75 +2.3 43,965 - GFF7179 0.75 +0.8 43,965 - GFF7179 0.75 -4.3 43,965 - GFF7179 0.75 -1.5 43,974 + GFF7179 0.76 +2.0 43,976 + GFF7179 0.76 -0.7 43,976 + GFF7179 0.76 -2.4 43,976 + GFF7179 0.76 -0.9 43,976 + GFF7179 0.76 +1.4 43,976 + GFF7179 0.76 -0.2 43,976 + GFF7179 0.76 -0.9 43,976 + GFF7179 0.76 -1.1 43,977 - GFF7179 0.76 +0.3 43,977 - GFF7179 0.76 -1.3 43,977 - GFF7179 0.76 -0.8 43,977 - GFF7179 0.76 -1.4 43,977 - GFF7179 0.76 -0.6 43,977 - GFF7179 0.76 -1.1 43,977 - GFF7179 0.76 -0.4 43,977 - GFF7179 0.76 -0.2 43,977 - GFF7179 0.76 -0.0 43,977 - GFF7179 0.76 +2.4 43,977 - GFF7179 0.76 +0.6 44,030 + GFF7179 0.80 -2.2 44,031 - GFF7179 0.80 -0.9 44,031 - GFF7179 0.80 -0.2 44,031 - GFF7179 0.80 -2.1 44,156 + GFF7179 0.89 -1.4 44,156 + GFF7179 0.89 -2.2 44,156 + GFF7179 0.89 -0.4 44,156 + GFF7179 0.89 -1.3 44,156 + GFF7179 0.89 -1.7 44,157 - GFF7179 0.89 -2.0 44,157 - GFF7179 0.89 -2.1 44,157 - GFF7179 0.89 -0.1 44,157 - GFF7179 0.89 -3.1 44,157 - GFF7179 0.89 -3.1 44,157 - GFF7179 0.89 -2.7 44,157 - GFF7179 0.89 +2.4 44,157 - GFF7179 0.89 +0.5 44,157 - GFF7179 0.89 +1.6 44,157 - GFF7179 0.89 -0.7 44,157 - GFF7179 0.89 -1.9 44,157 - GFF7179 0.89 -1.8 44,404 + -1.2 44,404 + -0.2 44,404 + +0.8 44,405 - -0.7 44,405 - -3.8 44,410 + -1.0 44,410 + -0.4 44,410 + +1.7 44,411 - -0.7 44,411 - -2.7 44,411 - -0.9 44,411 - -0.9 44,606 - +1.0 44,617 + +0.4 44,617 + -1.4 44,618 - -0.6 44,641 + +0.3 44,641 + +0.6 44,641 + +0.0 44,641 + -4.0 44,641 + +0.2 44,641 + -0.6 44,642 - -2.0 44,642 - -2.4 44,642 - +1.0 44,642 - -0.5 44,704 + -0.9 44,705 - -2.7 45,135 + GFF7180 0.69 -3.2 45,136 - GFF7180 0.69 +1.0 45,296 + -1.5 45,296 + -0.2 45,296 + -0.2 45,296 + +0.0 45,297 - -1.3 45,297 - -2.3 45,297 - -1.3 45,297 - -1.9 45,297 - -0.2
Or see this region's nucleotide sequence