Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF7139

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Community=Locust bean gum; Passage=4
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6,344	+	GFF7138	0.42	+1.6
6,344	+	GFF7138	0.42	+1.0
6,344	+	GFF7138	0.42	+0.6
6,344	+	GFF7138	0.42	+1.6
6,344	+	GFF7138	0.42	+1.6
6,344	+	GFF7138	0.42	+1.3
6,344	+	GFF7138	0.42	+1.6
6,344	+	GFF7138	0.42	-1.6
6,345	-	GFF7138	0.42	+0.3
6,345	-	GFF7138	0.42	-3.5
6,345	-	GFF7138	0.42	-0.2
6,345	-	GFF7138	0.42	+0.6
6,345	-	GFF7138	0.42	+1.0
6,345	-	GFF7138	0.42	+0.3
6,345	-	GFF7138	0.42	+1.0
6,345	-	GFF7138	0.42	-1.8
6,345	-	GFF7138	0.42	+0.6
6,446	+	GFF7138	0.49	+2.6
6,446	+	GFF7138	0.49	+0.3
6,447	-	GFF7138	0.49	-0.5
6,447	-	GFF7138	0.49	+2.1
6,447	-	GFF7138	0.49	+1.6
6,636	+	GFF7138	0.62	-0.6
6,636	+	GFF7138	0.62	-1.1
6,636	+	GFF7138	0.62	-0.9
6,636	+	GFF7138	0.62	+0.3
6,637	-	GFF7138	0.62	+0.1
6,637	-	GFF7138	0.62	-1.8
6,637	-	GFF7138	0.62	+0.3
6,637	-	GFF7138	0.62	-1.3
6,637	-	GFF7138	0.62	+2.6
6,637	-	GFF7138	0.62	-0.6
6,637	-	GFF7138	0.62	-1.7
6,756	+	GFF7138	0.70	+1.0
6,762	+	GFF7138	0.71	+0.0
7,079	+			+1.6
7,079	+			-1.1
7,079	+			-1.4
7,079	+			-1.9
7,079	+			-0.4
7,079	+			+1.0
7,079	+			+0.0
7,079	+			+0.3
7,079	+			+0.3
7,079	+			-1.1
7,079	+			-0.2
7,079	+			+1.6
7,079	+			-0.9
7,079	+			+0.6
7,079	+			-1.5
7,079	+			+2.8
7,079	+			+0.3
7,079	+			-0.7
7,079	+			+1.3
7,079	+			+2.8
7,079	+			+2.6
7,079	+			-0.6
7,079	+			-1.1
7,079	+			+1.6
7,079	+			-1.1
7,079	+			-1.3
7,079	+			+0.0
7,079	+			-1.4
7,080	-			+1.6
7,080	-			-0.2
7,080	-			-1.3
7,080	-			-0.4
7,080	-			+0.6
7,080	-			+0.0
7,080	-			-3.1
7,080	-			-1.4
7,080	-			+1.3
7,080	-			-1.2
7,080	-			-0.2
7,080	-			-1.7
7,080	-			-2.2
7,080	-			-1.7
7,179	-			-0.8
7,366	+	GFF7139	0.15	-1.0
7,366	+	GFF7139	0.15	-0.3
7,366	+	GFF7139	0.15	-2.5
7,367	-	GFF7139	0.15	-2.7
7,367	-	GFF7139	0.15	-0.7
7,669	+	GFF7139	0.35	-1.9
7,707	+	GFF7139	0.38	+1.8
7,707	+	GFF7139	0.38	-1.9
7,708	-	GFF7139	0.38	+0.6
7,708	-	GFF7139	0.38	+0.9
7,708	-	GFF7139	0.38	+0.7
7,726	+	GFF7139	0.39	-1.6
7,726	+	GFF7139	0.39	+0.6
7,726	+	GFF7139	0.39	-0.1
7,726	+	GFF7139	0.39	+0.6
7,726	+	GFF7139	0.39	-0.9
7,727	-	GFF7139	0.39	+0.5
7,727	-	GFF7139	0.39	-1.0
7,727	-	GFF7139	0.39	-1.4
7,727	-	GFF7139	0.39	+0.0
7,727	-	GFF7139	0.39	-1.8
7,727	-	GFF7139	0.39	-1.8
7,727	-	GFF7139	0.39	-0.6
7,727	-	GFF7139	0.39	+0.0
7,727	-	GFF7139	0.39	+0.1
8,037	+	GFF7139	0.61	-1.5
8,159	+	GFF7139	0.69	-1.4
8,159	+	GFF7139	0.69	-1.4
8,159	+	GFF7139	0.69	-3.1
8,159	+	GFF7139	0.69	-2.8
8,159	+	GFF7139	0.69	-0.7
8,159	+	GFF7139	0.69	-3.0
8,159	+	GFF7139	0.69	+2.0
8,159	+	GFF7139	0.69	-3.0
8,159	+	GFF7139	0.69	-1.3
8,159	+	GFF7139	0.69	-2.7
8,159	+	GFF7139	0.69	+0.0
8,159	+	GFF7139	0.69	+1.8
8,159	+	GFF7139	0.69	-3.5
8,159	+	GFF7139	0.69	-1.5
8,159	+	GFF7139	0.69	+0.6
8,159	+	GFF7139	0.69	-1.3
8,160	-	GFF7139	0.69	-0.1
8,160	-	GFF7139	0.69	-0.1
8,160	-	GFF7139	0.69	-0.6
8,160	-	GFF7139	0.69	-0.6
8,160	-	GFF7139	0.69	-0.5
8,160	-	GFF7139	0.69	-0.7
8,160	-	GFF7139	0.69	-1.7
8,160	-	GFF7139	0.69	-2.6
8,160	-	GFF7139	0.69	-0.3
8,160	-	GFF7139	0.69	+3.4
8,160	-	GFF7139	0.69	-2.5
8,160	-	GFF7139	0.69	-0.5
8,160	-	GFF7139	0.69	-0.6
8,160	-	GFF7139	0.69	+0.4
8,160	-	GFF7139	0.69	+1.3
8,160	-	GFF7139	0.69	+1.0
8,160	-	GFF7139	0.69	+0.9
8,160	-	GFF7139	0.69	-1.2
8,160	-	GFF7139	0.69	-1.6
8,160	-	GFF7139	0.69	-2.0
8,160	-	GFF7139	0.69	-1.1
8,160	-	GFF7139	0.69	-1.3
8,160	-	GFF7139	0.69	-1.7
8,179	+	GFF7139	0.70	-1.0
8,179	+	GFF7139	0.70	-1.2
8,179	+	GFF7139	0.70	-0.7
8,179	+	GFF7139	0.70	-1.8
8,179	+	GFF7139	0.70	-0.5
8,179	+	GFF7139	0.70	-0.1
8,179	+	GFF7139	0.70	-1.4
8,179	+	GFF7139	0.70	+0.4
8,180	-	GFF7139	0.70	+0.3
8,180	-	GFF7139	0.70	-0.2
8,180	-	GFF7139	0.70	-0.9
8,180	-	GFF7139	0.70	-1.2
8,180	-	GFF7139	0.70	-1.7
8,180	-	GFF7139	0.70	-0.8
8,180	-	GFF7139	0.70	+0.1
8,180	-	GFF7139	0.70	-0.4
8,180	-	GFF7139	0.70	-1.9
8,467	+			-1.1
8,467	+			+1.6
8,467	+			+0.2
8,467	+			-1.7
8,467	+			-0.5
8,467	+			-0.5
8,467	+			+0.3
8,467	+			-1.1
8,467	+			+0.8
8,467	+			+0.6
8,467	+			-0.2
8,467	+			+0.6
8,467	+			-0.2
8,467	+			+2.6
8,467	+			-2.4
8,467	+			-0.3
8,467	+			-1.6
8,467	+			-0.2
8,467	+			-0.2
8,467	+			+0.9
8,467	+			-1.0
8,467	+			+0.4
8,467	+			+1.1
8,467	+			-1.8
8,468	-			-2.2
8,468	-			-1.4
8,468	-			-1.1
8,468	-			-1.3
8,468	-			-2.1
8,468	-			-0.4
8,468	-			-0.4
8,468	-			-1.2
8,468	-			-0.9
8,468	-			+0.2
8,468	-			-0.3
8,468	-			-1.0
8,468	-			+3.2
8,468	-			-1.4
8,468	-			-0.9
8,468	-			-0.3
8,468	-			-1.8
8,468	-			-0.2
8,468	-			+0.3
8,468	-			-0.6
8,468	-			+0.5
8,468	-			+1.0
8,468	-			-1.9
8,468	-			+2.7
8,468	-			+0.0
8,468	-			+1.4
8,468	-			+0.3
8,468	-			-1.5
8,468	-			-1.9
8,468	-			-0.9
8,468	-			-0.7
8,468	-			-0.7
8,468	-			-0.8
8,601	+			-1.9
8,609	+			-3.8
8,609	+			-3.1
8,609	+			-0.9
8,610	-			-2.2
8,610	-			+0.4
8,610	-			-1.6
8,610	-			-1.7
8,610	-			-1.7
8,631	-			-0.3
8,649	+			-2.4
8,649	+			-1.5
8,649	+			+0.3
8,649	+			-0.2
8,649	+			-1.8
8,649	+			-0.6
8,649	+			+0.1
8,650	-			+0.9
8,650	-			-0.1
8,650	-			+0.8
8,650	-			+0.8
8,650	-			-1.8
8,650	-			-0.2
8,650	-			-0.4
8,650	-			+0.2
8,655	+			-0.9
8,656	-			-3.9
8,686	+	GFF7140	0.10	-0.1
8,735	+	GFF7140	0.39	-0.3
8,735	+	GFF7140	0.39	-1.2
8,735	+	GFF7140	0.39	-1.4
8,735	+	GFF7140	0.39	-2.0
8,735	+	GFF7140	0.39	+1.8
8,736	-	GFF7140	0.39	+1.6
8,736	-	GFF7140	0.39	+0.5
8,736	-	GFF7140	0.39	-1.7
8,736	-	GFF7140	0.39	-2.3
8,736	-	GFF7140	0.39	-0.1
8,981	+	GFF7141	0.15	-0.6
8,981	+	GFF7141	0.15	+0.1
8,981	+	GFF7141	0.15	+0.5
8,981	+	GFF7141	0.15	-1.8
8,981	+	GFF7141	0.15	-0.7
8,981	+	GFF7141	0.15	+0.6
8,982	-	GFF7141	0.15	-2.5
8,982	-	GFF7141	0.15	-0.5
8,982	-	GFF7141	0.15	+0.9
8,982	-	GFF7141	0.15	+0.6
8,982	-	GFF7141	0.15	-2.2
8,982	-	GFF7141	0.15	-2.3
9,035	+	GFF7141	0.32	-1.7
9,035	+	GFF7141	0.32	+0.5
9,035	+	GFF7141	0.32	-0.4
9,035	+	GFF7141	0.32	+1.3
9,035	+	GFF7141	0.32	-1.0
9,036	-	GFF7141	0.32	-2.3
9,036	-	GFF7141	0.32	-0.4
9,346	+			-1.4
9,346	+			-0.2
9,346	+			-1.0
9,346	+			-1.9
9,346	+			-1.4
9,346	+			-0.2
9,346	+			-0.9
9,346	+			+1.9
9,346	+			+1.3
9,346	+			+1.3
9,346	+			-0.1
9,347	-			+0.0
9,347	-			+1.2
9,347	-			-0.6
9,355	+			-2.6
9,355	+			+1.6
9,355	+			-1.6
9,355	+			-1.8
9,355	+			+0.1
9,355	+			-1.3
9,355	+			-1.9
9,356	-			+2.9
9,356	-			+0.9
9,356	-			-2.7
9,356	-			-3.7
9,356	-			+1.6
9,356	-			+1.2
9,430	+	GFF7142	0.18	+0.3
9,430	+	GFF7142	0.18	+0.2
9,430	+	GFF7142	0.18	-2.3
9,430	+	GFF7142	0.18	+0.4
9,430	+	GFF7142	0.18	+1.4
9,430	+	GFF7142	0.18	+0.3
9,430	+	GFF7142	0.18	+0.3
9,430	+	GFF7142	0.18	-1.8
9,430	+	GFF7142	0.18	+1.3
9,430	+	GFF7142	0.18	-1.6
9,430	+	GFF7142	0.18	+1.1
9,430	+	GFF7142	0.18	-2.0
9,430	+	GFF7142	0.18	-0.7
9,430	+	GFF7142	0.18	+0.6
9,431	-	GFF7142	0.18	+0.6
9,431	-	GFF7142	0.18	+0.3
9,431	-	GFF7142	0.18	+1.3
9,431	-	GFF7142	0.18	+0.1
9,431	-	GFF7142	0.18	-1.5
9,431	-	GFF7142	0.18	-1.2
9,431	-	GFF7142	0.18	-1.1
9,431	-	GFF7142	0.18	-0.2
9,431	-	GFF7142	0.18	-1.7
9,431	-	GFF7142	0.18	+1.3
9,431	-	GFF7142	0.18	-0.9
9,431	-	GFF7142	0.18	-0.4
9,431	-	GFF7142	0.18	-0.4
9,431	-	GFF7142	0.18	+1.0
9,431	-	GFF7142	0.18	+1.1
9,431	-	GFF7142	0.18	+0.3
9,431	-	GFF7142	0.18	-1.1
9,505	+	GFF7142	0.26	-0.0
9,505	+	GFF7142	0.26	-0.3
9,505	+	GFF7142	0.26	+0.6
9,505	+	GFF7142	0.26	+2.6
9,505	+	GFF7142	0.26	-3.3
9,505	+	GFF7142	0.26	-0.1
9,505	+	GFF7142	0.26	-1.2
9,505	+	GFF7142	0.26	-2.1
9,505	+	GFF7142	0.26	+0.3
9,505	+	GFF7142	0.26	+1.8
9,506	-	GFF7142	0.26	-0.7
9,506	-	GFF7142	0.26	+0.0
9,506	-	GFF7142	0.26	+1.3

Or see this region's nucleotide sequence