Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7021 and GFF7022 overlap by 4 nucleotides GFF7022 and GFF7023 are separated by 7 nucleotides
GFF7021 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 38,084 to 39,121
GFF7021
GFF7022 - Amidohydrolase domain protein, at 39,118 to 40,794
GFF7022
GFF7023 - Metal chaperone, involved in Zn homeostasis, at 40,802 to 41,773
GFF7023
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 38.723 kb on + strand, within GFF7021 at 38.724 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.850 kb on - strand, within GFF7021 at 39.142 kb on + strand at 39.142 kb on + strand at 39.358 kb on + strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.520 kb on + strand, within GFF7022 at 39.521 kb on - strand, within GFF7022 at 39.521 kb on - strand, within GFF7022 at 40.147 kb on + strand, within GFF7022 at 40.168 kb on + strand, within GFF7022 at 40.169 kb on - strand, within GFF7022 at 40.169 kb on - strand, within GFF7022 at 40.378 kb on + strand, within GFF7022 at 40.378 kb on + strand, within GFF7022 at 40.396 kb on + strand, within GFF7022 at 40.396 kb on + strand, within GFF7022
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 38,723 + GFF7021 0.62 +0.5 38,724 - GFF7021 0.62 -2.6 38,787 - GFF7021 0.68 +0.2 38,787 - GFF7021 0.68 -0.8 38,787 - GFF7021 0.68 -2.3 38,787 - GFF7021 0.68 -0.8 38,849 + GFF7021 0.74 +0.2 38,849 + GFF7021 0.74 -1.3 38,850 - GFF7021 0.74 -2.7 39,142 + -2.8 39,142 + -0.4 39,358 + GFF7022 0.14 +1.3 39,359 - GFF7022 0.14 -0.4 39,359 - GFF7022 0.14 -0.2 39,359 - GFF7022 0.14 +1.0 39,359 - GFF7022 0.14 -0.2 39,520 + GFF7022 0.24 +1.9 39,521 - GFF7022 0.24 -0.8 39,521 - GFF7022 0.24 +0.5 40,147 + GFF7022 0.61 +1.3 40,168 + GFF7022 0.63 -0.5 40,169 - GFF7022 0.63 +1.4 40,169 - GFF7022 0.63 -0.5 40,378 + GFF7022 0.75 -1.0 40,378 + GFF7022 0.75 -1.7 40,396 + GFF7022 0.76 -0.1 40,396 + GFF7022 0.76 -1.4
Or see this region's nucleotide sequence