Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6944 and GFF6945 are separated by 101 nucleotides GFF6945 and GFF6946 overlap by 8 nucleotides
GFF6944 - Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) @ Fructose-6-phosphate phosphoketolase (EC 4.1.2.22), at 18,689 to 21,061
GFF6944
GFF6945 - Two-component transcriptional response regulator, OmpR family, at 21,163 to 21,891
GFF6945
GFF6946 - Sensory box histidine kinase/response regulator, at 21,884 to 24,001
GFF6946
Position (kb) 21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 20.252 kb on + strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.361 kb on - strand, within GFF6944 at 20.361 kb on - strand, within GFF6944 at 20.380 kb on + strand, within GFF6944 at 20.381 kb on - strand, within GFF6944 at 20.424 kb on - strand, within GFF6944 at 20.799 kb on - strand, within GFF6944 at 20.837 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.083 kb on + strand at 21.083 kb on + strand at 21.084 kb on - strand at 21.106 kb on + strand at 21.106 kb on + strand at 21.130 kb on + strand at 21.130 kb on + strand at 21.146 kb on + strand at 21.146 kb on + strand at 21.147 kb on - strand at 21.147 kb on - strand at 21.207 kb on + strand at 21.208 kb on - strand at 21.229 kb on + strand at 21.230 kb on - strand at 21.230 kb on - strand at 21.449 kb on + strand, within GFF6945 at 21.449 kb on + strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.463 kb on + strand, within GFF6945 at 21.859 kb on + strand at 21.936 kb on + strand at 21.937 kb on - strand at 21.937 kb on - strand at 22.068 kb on - strand at 22.068 kb on - strand at 22.142 kb on + strand, within GFF6946 at 22.155 kb on - strand, within GFF6946 at 22.346 kb on + strand, within GFF6946 at 22.616 kb on + strand, within GFF6946 at 22.652 kb on + strand, within GFF6946 at 22.652 kb on + strand, within GFF6946 at 22.653 kb on - strand, within GFF6946
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 20,252 + GFF6944 0.66 +2.4 20,253 - GFF6944 0.66 +0.7 20,253 - GFF6944 0.66 +5.9 20,253 - GFF6944 0.66 +3.7 20,253 - GFF6944 0.66 -2.8 20,361 - GFF6944 0.70 +0.4 20,361 - GFF6944 0.70 +0.7 20,380 + GFF6944 0.71 -1.7 20,381 - GFF6944 0.71 -0.4 20,424 - GFF6944 0.73 -0.1 20,799 - GFF6944 0.89 -1.1 20,837 + -0.2 21,002 + -0.9 21,002 + +1.5 21,002 + -1.6 21,002 + +2.2 21,002 + -1.8 21,003 - -2.4 21,003 - -1.1 21,003 - -0.0 21,003 - +0.3 21,003 - -1.5 21,083 + -2.2 21,083 + +1.8 21,084 - -1.1 21,106 + -0.2 21,106 + +0.6 21,130 + -0.6 21,130 + +0.4 21,146 + -3.3 21,146 + -0.8 21,147 - -0.1 21,147 - -0.6 21,207 + -2.6 21,208 - -0.7 21,229 + +1.0 21,230 - +0.4 21,230 - -1.4 21,449 + GFF6945 0.39 -0.5 21,449 + GFF6945 0.39 +0.5 21,450 - GFF6945 0.39 +1.2 21,450 - GFF6945 0.39 +0.8 21,450 - GFF6945 0.39 +0.9 21,463 + GFF6945 0.41 -0.4 21,859 + +0.3 21,936 + +0.9 21,937 - -0.1 21,937 - -1.5 22,068 - -0.7 22,068 - -2.0 22,142 + GFF6946 0.12 -1.6 22,155 - GFF6946 0.13 +0.4 22,346 + GFF6946 0.22 -1.1 22,616 + GFF6946 0.35 -1.2 22,652 + GFF6946 0.36 -0.2 22,652 + GFF6946 0.36 -0.4 22,653 - GFF6946 0.36 +0.4
Or see this region's nucleotide sequence