Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6858 and GFF6859 are separated by 110 nucleotides GFF6859 and GFF6860 are separated by 131 nucleotides GFF6860 and GFF6861 overlap by 4 nucleotides GFF6861 and GFF6862 are separated by 93 nucleotides
GFF6858 - no description, at 52,017 to 52,169
GFF6858
GFF6859 - Two-component transcriptional response regulator, OmpR family, at 52,280 to 53,020
GFF6859
GFF6860 - Epoxide hydrolase (EC 3.3.2.9), at 53,152 to 54,186
GFF6860
GFF6861 - no description, at 54,183 to 54,347
GFF6861
GFF6862 - Two-component system sensor histidine kinase, at 54,441 to 55,793
GFF6862
Position (kb) 53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 52.236 kb on + strand at 52.236 kb on + strand at 52.237 kb on - strand at 52.237 kb on - strand at 52.237 kb on - strand at 52.237 kb on - strand at 52.261 kb on + strand at 52.261 kb on + strand at 52.261 kb on + strand at 52.261 kb on + strand at 52.315 kb on - strand at 52.315 kb on - strand at 52.315 kb on - strand at 52.315 kb on - strand at 52.341 kb on + strand at 52.341 kb on + strand at 52.342 kb on - strand at 52.342 kb on - strand at 52.484 kb on + strand, within GFF6859 at 52.485 kb on - strand, within GFF6859 at 52.485 kb on - strand, within GFF6859 at 52.485 kb on - strand, within GFF6859 at 52.704 kb on + strand, within GFF6859 at 52.704 kb on + strand, within GFF6859 at 52.705 kb on - strand, within GFF6859 at 52.705 kb on - strand, within GFF6859 at 52.705 kb on - strand, within GFF6859 at 52.705 kb on - strand, within GFF6859 at 52.788 kb on + strand, within GFF6859 at 52.788 kb on + strand, within GFF6859 at 52.788 kb on + strand, within GFF6859 at 52.788 kb on + strand, within GFF6859 at 52.788 kb on + strand, within GFF6859 at 52.788 kb on + strand, within GFF6859 at 52.789 kb on - strand, within GFF6859 at 52.789 kb on - strand, within GFF6859 at 52.789 kb on - strand, within GFF6859 at 52.789 kb on - strand, within GFF6859 at 52.789 kb on - strand, within GFF6859 at 52.789 kb on - strand, within GFF6859 at 52.789 kb on - strand, within GFF6859 at 52.947 kb on + strand at 52.947 kb on + strand at 52.947 kb on + strand at 52.948 kb on - strand at 52.948 kb on - strand at 52.948 kb on - strand at 52.948 kb on - strand at 53.065 kb on + strand at 53.065 kb on + strand at 53.066 kb on - strand at 53.098 kb on + strand at 53.098 kb on + strand at 53.098 kb on + strand at 53.098 kb on + strand at 53.098 kb on + strand at 53.099 kb on - strand at 53.099 kb on - strand at 53.099 kb on - strand at 53.099 kb on - strand at 53.099 kb on - strand at 53.099 kb on - strand at 53.133 kb on + strand at 53.133 kb on + strand at 53.133 kb on + strand at 53.133 kb on + strand at 53.134 kb on - strand at 53.134 kb on - strand at 53.134 kb on - strand at 53.134 kb on - strand at 53.134 kb on - strand at 53.220 kb on + strand at 53.220 kb on + strand at 53.220 kb on + strand at 53.220 kb on + strand at 53.220 kb on + strand at 53.221 kb on - strand at 53.221 kb on - strand at 53.221 kb on - strand at 53.221 kb on - strand at 53.221 kb on - strand at 53.221 kb on - strand at 53.221 kb on - strand at 53.373 kb on - strand, within GFF6860 at 53.381 kb on + strand, within GFF6860 at 53.381 kb on + strand, within GFF6860 at 53.381 kb on + strand, within GFF6860 at 53.381 kb on + strand, within GFF6860 at 53.382 kb on - strand, within GFF6860 at 53.382 kb on - strand, within GFF6860 at 53.393 kb on - strand, within GFF6860 at 53.420 kb on + strand, within GFF6860 at 53.420 kb on + strand, within GFF6860 at 53.445 kb on - strand, within GFF6860 at 53.445 kb on - strand, within GFF6860 at 53.445 kb on - strand, within GFF6860 at 53.496 kb on - strand, within GFF6860 at 53.496 kb on - strand, within GFF6860 at 53.588 kb on + strand, within GFF6860 at 53.589 kb on - strand, within GFF6860 at 53.589 kb on - strand, within GFF6860 at 53.589 kb on - strand, within GFF6860 at 53.589 kb on - strand, within GFF6860 at 53.589 kb on - strand, within GFF6860 at 53.591 kb on + strand, within GFF6860 at 53.591 kb on + strand, within GFF6860 at 53.591 kb on + strand, within GFF6860 at 53.591 kb on + strand, within GFF6860 at 53.592 kb on - strand, within GFF6860 at 53.592 kb on - strand, within GFF6860 at 53.592 kb on - strand, within GFF6860 at 53.597 kb on + strand, within GFF6860 at 53.663 kb on + strand, within GFF6860 at 53.663 kb on + strand, within GFF6860 at 53.663 kb on + strand, within GFF6860 at 53.664 kb on - strand, within GFF6860 at 53.664 kb on - strand, within GFF6860 at 53.664 kb on - strand, within GFF6860 at 53.664 kb on - strand, within GFF6860 at 53.664 kb on - strand, within GFF6860 at 53.744 kb on + strand, within GFF6860 at 53.745 kb on - strand, within GFF6860 at 53.930 kb on + strand, within GFF6860 at 53.930 kb on + strand, within GFF6860 at 53.930 kb on + strand, within GFF6860 at 53.930 kb on + strand, within GFF6860 at 53.930 kb on + strand, within GFF6860 at 53.931 kb on - strand, within GFF6860 at 53.931 kb on - strand, within GFF6860 at 53.931 kb on - strand, within GFF6860 at 53.931 kb on - strand, within GFF6860 at 53.931 kb on - strand, within GFF6860 at 53.931 kb on - strand, within GFF6860 at 53.951 kb on + strand, within GFF6860 at 53.951 kb on + strand, within GFF6860 at 53.999 kb on + strand, within GFF6860 at 53.999 kb on + strand, within GFF6860 at 53.999 kb on + strand, within GFF6860 at 53.999 kb on + strand, within GFF6860 at 54.002 kb on + strand, within GFF6860 at 54.003 kb on - strand, within GFF6860 at 54.243 kb on + strand, within GFF6861 at 54.243 kb on + strand, within GFF6861 at 54.243 kb on + strand, within GFF6861 at 54.243 kb on + strand, within GFF6861 at 54.244 kb on - strand, within GFF6861 at 54.244 kb on - strand, within GFF6861 at 54.244 kb on - strand, within GFF6861 at 54.244 kb on - strand, within GFF6861 at 54.244 kb on - strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.276 kb on + strand, within GFF6861 at 54.277 kb on - strand, within GFF6861 at 54.277 kb on - strand, within GFF6861 at 54.277 kb on - strand, within GFF6861 at 54.277 kb on - strand, within GFF6861 at 54.286 kb on + strand, within GFF6861 at 54.286 kb on + strand, within GFF6861 at 54.287 kb on - strand, within GFF6861 at 54.287 kb on - strand, within GFF6861 at 54.305 kb on - strand, within GFF6861 at 54.314 kb on + strand, within GFF6861 at 54.314 kb on + strand, within GFF6861 at 54.314 kb on + strand, within GFF6861 at 54.314 kb on + strand, within GFF6861 at 54.314 kb on + strand, within GFF6861 at 54.315 kb on - strand, within GFF6861 at 54.315 kb on - strand, within GFF6861 at 54.315 kb on - strand, within GFF6861 at 54.315 kb on - strand, within GFF6861 at 54.315 kb on - strand, within GFF6861 at 54.315 kb on - strand, within GFF6861 at 54.315 kb on - strand, within GFF6861 at 54.354 kb on + strand at 54.354 kb on + strand at 54.355 kb on - strand at 54.355 kb on - strand at 54.383 kb on - strand at 54.394 kb on + strand at 54.394 kb on + strand at 54.394 kb on + strand at 54.394 kb on + strand at 54.394 kb on + strand at 54.394 kb on + strand at 54.395 kb on - strand at 54.395 kb on - strand at 54.395 kb on - strand at 54.395 kb on - strand at 54.428 kb on + strand at 54.428 kb on + strand at 54.428 kb on + strand at 54.428 kb on + strand at 54.429 kb on - strand at 54.429 kb on - strand at 54.429 kb on - strand at 54.429 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.579 kb on + strand, within GFF6862 at 54.714 kb on + strand, within GFF6862 at 54.714 kb on + strand, within GFF6862 at 54.715 kb on - strand, within GFF6862 at 54.955 kb on + strand, within GFF6862 at 54.955 kb on + strand, within GFF6862 at 54.956 kb on - strand, within GFF6862 at 54.988 kb on - strand, within GFF6862 at 55.147 kb on - strand, within GFF6862 at 55.147 kb on - strand, within GFF6862
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 52,236 + +0.3 52,236 + +1.9 52,237 - +5.5 52,237 - -0.6 52,237 - -0.6 52,237 - -0.9 52,261 + -1.4 52,261 + +1.7 52,261 + -0.1 52,261 + -2.5 52,315 - -0.3 52,315 - +0.6 52,315 - -2.4 52,315 - +1.4 52,341 + -0.8 52,341 + +0.9 52,342 - -0.8 52,342 - +1.4 52,484 + GFF6859 0.28 -1.2 52,485 - GFF6859 0.28 +0.9 52,485 - GFF6859 0.28 -1.8 52,485 - GFF6859 0.28 -1.1 52,704 + GFF6859 0.57 -2.4 52,704 + GFF6859 0.57 +0.5 52,705 - GFF6859 0.57 -2.8 52,705 - GFF6859 0.57 -2.2 52,705 - GFF6859 0.57 -1.5 52,705 - GFF6859 0.57 +0.4 52,788 + GFF6859 0.69 -1.1 52,788 + GFF6859 0.69 -2.4 52,788 + GFF6859 0.69 -0.5 52,788 + GFF6859 0.69 -0.6 52,788 + GFF6859 0.69 +0.5 52,788 + GFF6859 0.69 -1.8 52,789 - GFF6859 0.69 +0.4 52,789 - GFF6859 0.69 -0.4 52,789 - GFF6859 0.69 +1.7 52,789 - GFF6859 0.69 -1.1 52,789 - GFF6859 0.69 +0.9 52,789 - GFF6859 0.69 +0.4 52,789 - GFF6859 0.69 -0.6 52,947 + +0.3 52,947 + -2.2 52,947 + -1.1 52,948 - -2.4 52,948 - +0.3 52,948 - -0.9 52,948 - +0.4 53,065 + -0.6 53,065 + +0.9 53,066 - +0.5 53,098 + -2.2 53,098 + -0.4 53,098 + -2.4 53,098 + +0.2 53,098 + -2.8 53,099 - -0.1 53,099 - +0.1 53,099 - +1.1 53,099 - +0.3 53,099 - +2.2 53,099 - -3.3 53,133 + +1.2 53,133 + -2.8 53,133 + -1.2 53,133 + -2.6 53,134 - -0.2 53,134 - -0.1 53,134 - -3.5 53,134 - -0.9 53,134 - -1.4 53,220 + -1.1 53,220 + -2.6 53,220 + -2.8 53,220 + -1.3 53,220 + -0.4 53,221 - -0.5 53,221 - -2.8 53,221 - -1.1 53,221 - -2.2 53,221 - -1.1 53,221 - -2.0 53,221 - +1.3 53,373 - GFF6860 0.21 -0.2 53,381 + GFF6860 0.22 -1.9 53,381 + GFF6860 0.22 -1.6 53,381 + GFF6860 0.22 -1.4 53,381 + GFF6860 0.22 -0.9 53,382 - GFF6860 0.22 +0.8 53,382 - GFF6860 0.22 -3.8 53,393 - GFF6860 0.23 -2.2 53,420 + GFF6860 0.26 +0.6 53,420 + GFF6860 0.26 +1.5 53,445 - GFF6860 0.28 +0.0 53,445 - GFF6860 0.28 -3.1 53,445 - GFF6860 0.28 -0.1 53,496 - GFF6860 0.33 +1.8 53,496 - GFF6860 0.33 +0.6 53,588 + GFF6860 0.42 -1.9 53,589 - GFF6860 0.42 -1.2 53,589 - GFF6860 0.42 +0.4 53,589 - GFF6860 0.42 -0.4 53,589 - GFF6860 0.42 -0.1 53,589 - GFF6860 0.42 -2.3 53,591 + GFF6860 0.42 +1.9 53,591 + GFF6860 0.42 -1.5 53,591 + GFF6860 0.42 +0.3 53,591 + GFF6860 0.42 +0.5 53,592 - GFF6860 0.43 -0.4 53,592 - GFF6860 0.43 +0.2 53,592 - GFF6860 0.43 +1.6 53,597 + GFF6860 0.43 +1.8 53,663 + GFF6860 0.49 +0.4 53,663 + GFF6860 0.49 +1.9 53,663 + GFF6860 0.49 -2.9 53,664 - GFF6860 0.49 -2.5 53,664 - GFF6860 0.49 -0.4 53,664 - GFF6860 0.49 -0.1 53,664 - GFF6860 0.49 -0.3 53,664 - GFF6860 0.49 +1.1 53,744 + GFF6860 0.57 -1.4 53,745 - GFF6860 0.57 -0.1 53,930 + GFF6860 0.75 +0.9 53,930 + GFF6860 0.75 -0.7 53,930 + GFF6860 0.75 -1.9 53,930 + GFF6860 0.75 +0.4 53,930 + GFF6860 0.75 -1.0 53,931 - GFF6860 0.75 -0.1 53,931 - GFF6860 0.75 +1.2 53,931 - GFF6860 0.75 -0.7 53,931 - GFF6860 0.75 -2.7 53,931 - GFF6860 0.75 +0.9 53,931 - GFF6860 0.75 +0.6 53,951 + GFF6860 0.77 -3.9 53,951 + GFF6860 0.77 -1.1 53,999 + GFF6860 0.82 +6.1 53,999 + GFF6860 0.82 +0.2 53,999 + GFF6860 0.82 +0.6 53,999 + GFF6860 0.82 +0.9 54,002 + GFF6860 0.82 -1.1 54,003 - GFF6860 0.82 -3.1 54,243 + GFF6861 0.36 +1.1 54,243 + GFF6861 0.36 -2.5 54,243 + GFF6861 0.36 -0.6 54,243 + GFF6861 0.36 +0.7 54,244 - GFF6861 0.37 -1.0 54,244 - GFF6861 0.37 -0.5 54,244 - GFF6861 0.37 -2.4 54,244 - GFF6861 0.37 -2.1 54,244 - GFF6861 0.37 -1.1 54,276 + GFF6861 0.56 -0.6 54,276 + GFF6861 0.56 +0.8 54,276 + GFF6861 0.56 -1.8 54,276 + GFF6861 0.56 -2.2 54,276 + GFF6861 0.56 +1.8 54,276 + GFF6861 0.56 +1.3 54,276 + GFF6861 0.56 -2.4 54,276 + GFF6861 0.56 -1.1 54,276 + GFF6861 0.56 +2.6 54,277 - GFF6861 0.57 -2.1 54,277 - GFF6861 0.57 -0.1 54,277 - GFF6861 0.57 +0.4 54,277 - GFF6861 0.57 +0.6 54,286 + GFF6861 0.62 +0.6 54,286 + GFF6861 0.62 -1.4 54,287 - GFF6861 0.63 +0.5 54,287 - GFF6861 0.63 -0.0 54,305 - GFF6861 0.74 +0.8 54,314 + GFF6861 0.79 -1.6 54,314 + GFF6861 0.79 +0.4 54,314 + GFF6861 0.79 -0.1 54,314 + GFF6861 0.79 -0.9 54,314 + GFF6861 0.79 -0.6 54,315 - GFF6861 0.80 -3.4 54,315 - GFF6861 0.80 -0.5 54,315 - GFF6861 0.80 -0.1 54,315 - GFF6861 0.80 +3.6 54,315 - GFF6861 0.80 +2.6 54,315 - GFF6861 0.80 +0.3 54,315 - GFF6861 0.80 -1.0 54,354 + -1.1 54,354 + +0.1 54,355 - -0.3 54,355 - -2.1 54,383 - +2.9 54,394 + -0.1 54,394 + +0.9 54,394 + +0.7 54,394 + -0.9 54,394 + -1.1 54,394 + -2.7 54,395 - -2.0 54,395 - -1.5 54,395 - +0.3 54,395 - +1.6 54,428 + -0.4 54,428 + -0.6 54,428 + -2.6 54,428 + -0.4 54,429 - -1.4 54,429 - +1.5 54,429 - +4.4 54,429 - +0.4 54,431 - -0.4 54,431 - -1.4 54,431 - -0.6 54,431 - -1.7 54,579 + GFF6862 0.10 -3.0 54,714 + GFF6862 0.20 -2.2 54,714 + GFF6862 0.20 +0.2 54,715 - GFF6862 0.20 -1.5 54,955 + GFF6862 0.38 -1.5 54,955 + GFF6862 0.38 +0.9 54,956 - GFF6862 0.38 +0.9 54,988 - GFF6862 0.40 -0.1 55,147 - GFF6862 0.52 -0.1 55,147 - GFF6862 0.52 -0.1
Or see this region's nucleotide sequence