Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6786 and GFF6787 are separated by 13 nucleotides GFF6787 and GFF6788 are separated by 29 nucleotides GFF6788 and GFF6789 are separated by 1 nucleotides
GFF6786 - CopG protein, at 35,662 to 36,123
GFF6786
GFF6787 - Copper tolerance protein, at 36,137 to 36,661
GFF6787
GFF6788 - Multicopper oxidase, at 36,691 to 38,082
GFF6788
GFF6789 - Copper tolerance protein, at 38,084 to 39,556
GFF6789
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 35.720 kb on + strand, within GFF6786 at 35.721 kb on - strand, within GFF6786 at 35.741 kb on + strand, within GFF6786 at 35.742 kb on - strand, within GFF6786 at 35.865 kb on - strand, within GFF6786 at 36.198 kb on + strand, within GFF6787 at 36.198 kb on + strand, within GFF6787 at 36.439 kb on - strand, within GFF6787 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.026 kb on - strand, within GFF6788 at 37.026 kb on - strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.620 kb on - strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 38.289 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.760 kb on + strand, within GFF6789 at 38.760 kb on + strand, within GFF6789 at 38.761 kb on - strand, within GFF6789 at 38.761 kb on - strand, within GFF6789 at 38.971 kb on - strand, within GFF6789
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 35,720 + GFF6786 0.13 -0.3 35,721 - GFF6786 0.13 +1.5 35,741 + GFF6786 0.17 +2.5 35,742 - GFF6786 0.17 -2.2 35,865 - GFF6786 0.44 +0.3 36,198 + GFF6787 0.12 -1.1 36,198 + GFF6787 0.12 -1.2 36,439 - GFF6787 0.58 +0.5 37,025 + GFF6788 0.24 -1.8 37,025 + GFF6788 0.24 -2.7 37,025 + GFF6788 0.24 -1.4 37,025 + GFF6788 0.24 -2.9 37,025 + GFF6788 0.24 -0.9 37,025 + GFF6788 0.24 -2.9 37,025 + GFF6788 0.24 -0.6 37,025 + GFF6788 0.24 +1.2 37,026 - GFF6788 0.24 -2.9 37,026 - GFF6788 0.24 -2.4 37,583 + GFF6788 0.64 +0.1 37,583 + GFF6788 0.64 -0.5 37,583 + GFF6788 0.64 +0.5 37,583 + GFF6788 0.64 +0.3 37,583 + GFF6788 0.64 +2.1 37,583 + GFF6788 0.64 -1.5 37,583 + GFF6788 0.64 -1.5 37,583 + GFF6788 0.64 -0.8 37,583 + GFF6788 0.64 +0.4 37,583 + GFF6788 0.64 -1.6 37,584 - GFF6788 0.64 -0.3 37,584 - GFF6788 0.64 +1.4 37,584 - GFF6788 0.64 -1.3 37,584 - GFF6788 0.64 +4.5 37,584 - GFF6788 0.64 -2.5 37,584 - GFF6788 0.64 +3.6 37,584 - GFF6788 0.64 -0.4 37,620 - GFF6788 0.67 +1.6 37,802 + GFF6788 0.80 +0.5 37,802 + GFF6788 0.80 -1.4 37,802 + GFF6788 0.80 +0.8 37,803 - GFF6788 0.80 -1.2 37,803 - GFF6788 0.80 -2.9 37,803 - GFF6788 0.80 -0.5 37,803 - GFF6788 0.80 -1.3 37,934 + GFF6788 0.89 -1.1 37,934 + GFF6788 0.89 -0.5 37,934 + GFF6788 0.89 -1.7 37,934 + GFF6788 0.89 -1.1 37,934 + GFF6788 0.89 +0.1 37,934 + GFF6788 0.89 -1.2 37,934 + GFF6788 0.89 -0.9 37,935 - GFF6788 0.89 -2.9 37,935 - GFF6788 0.89 -1.7 37,935 - GFF6788 0.89 +0.1 37,935 - GFF6788 0.89 -0.3 38,289 + GFF6789 0.14 +1.1 38,364 + GFF6789 0.19 +0.5 38,364 + GFF6789 0.19 +0.1 38,364 + GFF6789 0.19 +2.0 38,364 + GFF6789 0.19 +0.4 38,365 - GFF6789 0.19 -3.4 38,365 - GFF6789 0.19 -0.3 38,365 - GFF6789 0.19 +0.1 38,452 - GFF6789 0.25 -1.4 38,452 - GFF6789 0.25 -0.3 38,452 - GFF6789 0.25 -0.9 38,760 + GFF6789 0.46 -0.5 38,760 + GFF6789 0.46 -0.3 38,761 - GFF6789 0.46 -2.0 38,761 - GFF6789 0.46 -1.4 38,971 - GFF6789 0.60 +0.7
Or see this region's nucleotide sequence