Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6709 and GFF6710 overlap by 1 nucleotides GFF6710 and GFF6711 are separated by 23 nucleotides GFF6711 and GFF6712 overlap by 1 nucleotides
GFF6709 - Putative hemagglutinin-related protein, at 17,162 to 18,418
GFF6709
GFF6710 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 18,418 to 19,371
GFF6710
GFF6711 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 19,395 to 20,219
GFF6711
GFF6712 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 20,219 to 21,259
GFF6712
Position (kb) 19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 18.439 kb on + strand at 18.884 kb on + strand, within GFF6710 at 18.884 kb on + strand, within GFF6710 at 18.884 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.064 kb on - strand, within GFF6710 at 19.307 kb on - strand at 19.307 kb on - strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.340 kb on - strand at 19.584 kb on + strand, within GFF6711 at 19.584 kb on + strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.824 kb on + strand, within GFF6711 at 19.825 kb on - strand, within GFF6711 at 19.942 kb on + strand, within GFF6711 at 19.943 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711 at 20.939 kb on + strand, within GFF6712 at 21.002 kb on + strand, within GFF6712 at 21.003 kb on - strand, within GFF6712
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 18,439 + +0.1 18,884 + GFF6710 0.49 -1.1 18,884 + GFF6710 0.49 -1.7 18,884 + GFF6710 0.49 -3.8 19,063 + GFF6710 0.68 +1.1 19,063 + GFF6710 0.68 -1.9 19,063 + GFF6710 0.68 +2.3 19,064 - GFF6710 0.68 +0.9 19,307 - +2.3 19,307 - -3.3 19,339 + -1.4 19,339 + +0.7 19,339 + -0.1 19,340 - +0.1 19,584 + GFF6711 0.23 -2.3 19,584 + GFF6711 0.23 -0.1 19,585 - GFF6711 0.23 -1.8 19,585 - GFF6711 0.23 +0.7 19,585 - GFF6711 0.23 -2.0 19,585 - GFF6711 0.23 +0.5 19,585 - GFF6711 0.23 +1.8 19,824 + GFF6711 0.52 +3.5 19,825 - GFF6711 0.52 -2.4 19,942 + GFF6711 0.66 +1.1 19,943 - GFF6711 0.66 -0.3 20,092 - GFF6711 0.84 -2.9 20,092 - GFF6711 0.84 -0.1 20,939 + GFF6712 0.69 +0.8 21,002 + GFF6712 0.75 +0.5 21,003 - GFF6712 0.75 -1.8
Or see this region's nucleotide sequence