Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6668 and GFF6669 are separated by 57 nucleotides GFF6669 and GFF6670 are separated by 86 nucleotides GFF6670 and GFF6671 are separated by 39 nucleotides
GFF6668 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 44,531 to 46,345
GFF6668
GFF6669 - hypothetical protein, at 46,403 to 46,720
GFF6669
GFF6670 - LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20), at 46,807 to 47,358
GFF6670
GFF6671 - Membrane proteins related to metalloendopeptidases, at 47,398 to 48,318
GFF6671
Position (kb) 46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.343 kb on + strand at 46.343 kb on + strand at 46.343 kb on + strand at 46.343 kb on + strand at 46.343 kb on + strand at 46.344 kb on - strand at 46.344 kb on - strand at 46.344 kb on - strand at 46.344 kb on - strand at 46.344 kb on - strand at 46.344 kb on - strand at 46.344 kb on - strand at 46.431 kb on + strand at 46.431 kb on + strand at 46.431 kb on + strand at 46.431 kb on + strand at 46.431 kb on + strand at 46.432 kb on - strand at 46.432 kb on - strand at 46.432 kb on - strand at 46.432 kb on - strand at 46.515 kb on + strand, within GFF6669 at 46.515 kb on + strand, within GFF6669 at 46.516 kb on - strand, within GFF6669 at 46.516 kb on - strand, within GFF6669 at 46.516 kb on - strand, within GFF6669 at 46.615 kb on + strand, within GFF6669 at 46.615 kb on + strand, within GFF6669 at 46.702 kb on + strand at 46.702 kb on + strand at 46.702 kb on + strand at 46.702 kb on + strand at 46.702 kb on + strand at 46.702 kb on + strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.703 kb on - strand at 46.794 kb on - strand at 46.794 kb on - strand at 46.794 kb on - strand at 46.855 kb on + strand at 46.855 kb on + strand at 46.855 kb on + strand at 46.856 kb on - strand at 46.930 kb on + strand, within GFF6670 at 46.930 kb on + strand, within GFF6670 at 46.930 kb on + strand, within GFF6670 at 46.930 kb on + strand, within GFF6670 at 46.930 kb on + strand, within GFF6670 at 46.931 kb on - strand, within GFF6670 at 46.931 kb on - strand, within GFF6670 at 46.931 kb on - strand, within GFF6670 at 46.931 kb on - strand, within GFF6670 at 46.931 kb on - strand, within GFF6670 at 46.931 kb on - strand, within GFF6670 at 46.931 kb on - strand, within GFF6670 at 47.038 kb on + strand, within GFF6670 at 47.038 kb on + strand, within GFF6670 at 47.038 kb on + strand, within GFF6670 at 47.038 kb on + strand, within GFF6670 at 47.038 kb on + strand, within GFF6670 at 47.038 kb on + strand, within GFF6670 at 47.039 kb on - strand, within GFF6670 at 47.039 kb on - strand, within GFF6670 at 47.039 kb on - strand, within GFF6670
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 46,343 + -0.4 46,343 + +0.1 46,343 + +1.3 46,343 + -0.3 46,343 + +0.4 46,344 - -0.7 46,344 - -0.2 46,344 - -1.3 46,344 - +0.5 46,344 - -2.7 46,344 - +0.1 46,344 - -3.0 46,431 + -2.6 46,431 + -1.0 46,431 + -0.1 46,431 + -3.1 46,431 + -0.3 46,432 - -0.2 46,432 - -1.4 46,432 - -1.7 46,432 - +1.0 46,515 + GFF6669 0.35 +0.9 46,515 + GFF6669 0.35 -1.2 46,516 - GFF6669 0.36 +1.0 46,516 - GFF6669 0.36 -2.5 46,516 - GFF6669 0.36 +0.7 46,615 + GFF6669 0.67 -2.0 46,615 + GFF6669 0.67 -2.1 46,702 + -1.1 46,702 + -0.4 46,702 + -3.3 46,702 + +0.8 46,702 + +0.0 46,702 + -1.6 46,703 - -0.2 46,703 - -1.0 46,703 - -0.1 46,703 - +2.0 46,703 - -1.2 46,703 - -2.3 46,703 - -3.3 46,703 - +0.1 46,703 - -1.7 46,794 - +1.6 46,794 - +0.5 46,794 - +1.8 46,855 + -0.1 46,855 + -0.5 46,855 + -0.5 46,856 - -0.3 46,930 + GFF6670 0.22 -1.7 46,930 + GFF6670 0.22 -1.9 46,930 + GFF6670 0.22 -1.2 46,930 + GFF6670 0.22 -2.5 46,930 + GFF6670 0.22 -1.3 46,931 - GFF6670 0.22 +1.4 46,931 - GFF6670 0.22 +1.0 46,931 - GFF6670 0.22 -1.2 46,931 - GFF6670 0.22 +0.4 46,931 - GFF6670 0.22 +0.7 46,931 - GFF6670 0.22 +0.0 46,931 - GFF6670 0.22 -3.1 47,038 + GFF6670 0.42 +1.5 47,038 + GFF6670 0.42 +0.9 47,038 + GFF6670 0.42 +0.1 47,038 + GFF6670 0.42 +0.8 47,038 + GFF6670 0.42 -0.8 47,038 + GFF6670 0.42 +0.9 47,039 - GFF6670 0.42 +0.5 47,039 - GFF6670 0.42 -0.8 47,039 - GFF6670 0.42 +0.0
Or see this region's nucleotide sequence