Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6644 and GFF6645 are separated by 31 nucleotides GFF6645 and GFF6646 are separated by 45 nucleotides GFF6646 and GFF6647 are separated by 42 nucleotides
GFF6644 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 17,988 to 19,457
GFF6644
GFF6645 - no description, at 19,489 to 19,869
GFF6645
GFF6646 - no description, at 19,915 to 20,541
GFF6646
GFF6647 - Two-component transcriptional response regulator, LuxR family, at 20,584 to 21,288
GFF6647
Position (kb) 19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 18.495 kb on + strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.545 kb on - strand, within GFF6644 at 18.545 kb on - strand, within GFF6644 at 18.669 kb on + strand, within GFF6644 at 18.669 kb on + strand, within GFF6644 at 18.840 kb on + strand, within GFF6644 at 18.841 kb on - strand, within GFF6644 at 19.410 kb on + strand at 19.410 kb on + strand at 19.495 kb on + strand at 19.495 kb on + strand at 19.495 kb on + strand at 19.496 kb on - strand at 19.496 kb on - strand at 19.496 kb on - strand at 19.496 kb on - strand at 19.496 kb on - strand at 19.496 kb on - strand at 19.496 kb on - strand at 19.732 kb on + strand, within GFF6645 at 19.732 kb on + strand, within GFF6645 at 19.732 kb on + strand, within GFF6645 at 19.732 kb on + strand, within GFF6645 at 19.732 kb on + strand, within GFF6645 at 19.732 kb on + strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.733 kb on - strand, within GFF6645 at 19.811 kb on + strand, within GFF6645 at 19.811 kb on + strand, within GFF6645 at 19.812 kb on - strand, within GFF6645 at 19.812 kb on - strand, within GFF6645 at 19.899 kb on + strand at 19.899 kb on + strand at 19.899 kb on + strand at 19.900 kb on - strand at 19.900 kb on - strand at 19.900 kb on - strand at 19.978 kb on + strand, within GFF6646 at 19.978 kb on + strand, within GFF6646 at 19.979 kb on - strand, within GFF6646 at 19.979 kb on - strand, within GFF6646 at 19.979 kb on - strand, within GFF6646 at 20.030 kb on + strand, within GFF6646 at 20.030 kb on + strand, within GFF6646 at 20.030 kb on + strand, within GFF6646 at 20.031 kb on - strand, within GFF6646 at 20.031 kb on - strand, within GFF6646 at 20.031 kb on - strand, within GFF6646 at 20.031 kb on - strand, within GFF6646 at 20.041 kb on + strand, within GFF6646 at 20.041 kb on + strand, within GFF6646 at 20.041 kb on + strand, within GFF6646 at 20.041 kb on + strand, within GFF6646 at 20.041 kb on + strand, within GFF6646 at 20.041 kb on + strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.042 kb on - strand, within GFF6646 at 20.050 kb on + strand, within GFF6646 at 20.050 kb on + strand, within GFF6646 at 20.218 kb on + strand, within GFF6646 at 20.218 kb on + strand, within GFF6646 at 20.219 kb on - strand, within GFF6646 at 20.219 kb on - strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.281 kb on + strand, within GFF6646 at 20.282 kb on - strand, within GFF6646 at 20.282 kb on - strand, within GFF6646 at 20.282 kb on - strand, within GFF6646 at 20.282 kb on - strand, within GFF6646 at 20.282 kb on - strand, within GFF6646 at 20.282 kb on - strand, within GFF6646 at 20.282 kb on - strand, within GFF6646 at 20.422 kb on + strand, within GFF6646 at 20.422 kb on + strand, within GFF6646 at 20.422 kb on + strand, within GFF6646 at 20.422 kb on + strand, within GFF6646 at 20.422 kb on + strand, within GFF6646 at 20.423 kb on - strand, within GFF6646 at 20.423 kb on - strand, within GFF6646 at 20.423 kb on - strand, within GFF6646 at 20.456 kb on - strand, within GFF6646 at 20.456 kb on - strand, within GFF6646 at 20.456 kb on - strand, within GFF6646 at 20.482 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.512 kb on + strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.513 kb on - strand at 20.539 kb on + strand at 20.539 kb on + strand at 20.677 kb on + strand, within GFF6647 at 20.677 kb on + strand, within GFF6647 at 20.677 kb on + strand, within GFF6647 at 20.678 kb on - strand, within GFF6647 at 20.767 kb on + strand, within GFF6647 at 20.767 kb on + strand, within GFF6647 at 20.768 kb on - strand, within GFF6647
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 18,495 + GFF6644 0.34 -0.1 18,495 + GFF6644 0.34 +1.5 18,495 + GFF6644 0.34 +0.0 18,517 + GFF6644 0.36 -1.7 18,517 + GFF6644 0.36 +1.2 18,517 + GFF6644 0.36 -1.1 18,517 + GFF6644 0.36 -2.2 18,517 + GFF6644 0.36 -1.1 18,517 + GFF6644 0.36 -2.1 18,518 - GFF6644 0.36 -2.2 18,518 - GFF6644 0.36 +0.0 18,518 - GFF6644 0.36 -0.4 18,518 - GFF6644 0.36 -1.8 18,518 - GFF6644 0.36 -0.8 18,518 - GFF6644 0.36 +1.3 18,544 + GFF6644 0.38 -0.0 18,544 + GFF6644 0.38 -0.7 18,544 + GFF6644 0.38 -1.5 18,544 + GFF6644 0.38 -2.5 18,544 + GFF6644 0.38 +0.4 18,544 + GFF6644 0.38 -4.5 18,544 + GFF6644 0.38 -1.4 18,545 - GFF6644 0.38 -2.1 18,545 - GFF6644 0.38 +1.6 18,669 + GFF6644 0.46 -0.5 18,669 + GFF6644 0.46 +0.5 18,840 + GFF6644 0.58 -2.9 18,841 - GFF6644 0.58 -1.7 19,410 + +1.0 19,410 + -0.2 19,495 + +0.0 19,495 + -1.5 19,495 + -2.6 19,496 - -1.9 19,496 - -1.5 19,496 - -3.0 19,496 - +1.0 19,496 - -2.0 19,496 - -0.5 19,496 - -1.5 19,732 + GFF6645 0.64 -3.1 19,732 + GFF6645 0.64 -2.6 19,732 + GFF6645 0.64 +0.2 19,732 + GFF6645 0.64 +0.9 19,732 + GFF6645 0.64 -1.4 19,732 + GFF6645 0.64 -2.5 19,733 - GFF6645 0.64 +0.7 19,733 - GFF6645 0.64 -0.1 19,733 - GFF6645 0.64 -2.2 19,733 - GFF6645 0.64 -1.3 19,733 - GFF6645 0.64 -1.4 19,733 - GFF6645 0.64 -1.0 19,733 - GFF6645 0.64 -1.1 19,733 - GFF6645 0.64 -1.2 19,811 + GFF6645 0.85 -1.0 19,811 + GFF6645 0.85 +0.4 19,812 - GFF6645 0.85 -3.0 19,812 - GFF6645 0.85 -3.1 19,899 + -0.7 19,899 + +1.1 19,899 + -2.3 19,900 - +1.4 19,900 - -2.0 19,900 - -0.9 19,978 + GFF6646 0.10 +0.9 19,978 + GFF6646 0.10 +2.4 19,979 - GFF6646 0.10 -1.5 19,979 - GFF6646 0.10 -0.3 19,979 - GFF6646 0.10 -0.5 20,030 + GFF6646 0.18 -0.5 20,030 + GFF6646 0.18 -0.3 20,030 + GFF6646 0.18 -0.8 20,031 - GFF6646 0.19 -1.1 20,031 - GFF6646 0.19 -1.7 20,031 - GFF6646 0.19 -1.7 20,031 - GFF6646 0.19 -0.2 20,041 + GFF6646 0.20 -1.3 20,041 + GFF6646 0.20 -2.7 20,041 + GFF6646 0.20 -3.2 20,041 + GFF6646 0.20 +1.0 20,041 + GFF6646 0.20 -0.7 20,041 + GFF6646 0.20 -3.6 20,042 - GFF6646 0.20 -2.1 20,042 - GFF6646 0.20 +0.5 20,042 - GFF6646 0.20 -1.2 20,042 - GFF6646 0.20 -0.3 20,042 - GFF6646 0.20 +0.0 20,042 - GFF6646 0.20 +2.1 20,042 - GFF6646 0.20 -1.7 20,042 - GFF6646 0.20 +0.1 20,042 - GFF6646 0.20 -2.5 20,042 - GFF6646 0.20 +1.0 20,050 + GFF6646 0.22 +0.9 20,050 + GFF6646 0.22 -3.0 20,218 + GFF6646 0.48 -1.1 20,218 + GFF6646 0.48 +0.8 20,219 - GFF6646 0.48 -1.0 20,219 - GFF6646 0.48 +2.9 20,281 + GFF6646 0.58 -1.5 20,281 + GFF6646 0.58 +1.0 20,281 + GFF6646 0.58 -0.0 20,281 + GFF6646 0.58 +0.1 20,281 + GFF6646 0.58 -1.0 20,281 + GFF6646 0.58 -2.1 20,281 + GFF6646 0.58 -0.6 20,281 + GFF6646 0.58 -0.5 20,281 + GFF6646 0.58 -0.3 20,281 + GFF6646 0.58 -1.7 20,281 + GFF6646 0.58 -1.1 20,282 - GFF6646 0.59 +0.5 20,282 - GFF6646 0.59 +1.7 20,282 - GFF6646 0.59 -1.0 20,282 - GFF6646 0.59 -0.9 20,282 - GFF6646 0.59 -1.4 20,282 - GFF6646 0.59 -0.8 20,282 - GFF6646 0.59 +0.5 20,422 + GFF6646 0.81 +0.5 20,422 + GFF6646 0.81 -2.7 20,422 + GFF6646 0.81 -1.5 20,422 + GFF6646 0.81 +1.0 20,422 + GFF6646 0.81 +1.6 20,423 - GFF6646 0.81 -1.8 20,423 - GFF6646 0.81 -2.1 20,423 - GFF6646 0.81 -1.1 20,456 - GFF6646 0.86 -0.1 20,456 - GFF6646 0.86 +0.1 20,456 - GFF6646 0.86 +0.2 20,482 + -0.8 20,512 + -2.2 20,512 + -1.1 20,512 + +2.0 20,512 + +0.2 20,512 + -1.1 20,512 + -1.9 20,512 + -0.7 20,512 + -1.1 20,512 + +0.3 20,512 + +0.8 20,512 + -1.9 20,512 + -1.5 20,512 + +0.5 20,512 + +1.2 20,512 + +0.2 20,512 + +0.2 20,512 + -0.5 20,512 + -0.1 20,512 + -3.6 20,513 - +1.3 20,513 - +1.8 20,513 - +0.4 20,513 - -2.0 20,513 - +0.5 20,513 - -1.0 20,513 - +0.9 20,513 - -1.5 20,513 - -1.8 20,513 - +2.6 20,513 - -1.5 20,513 - -1.1 20,513 - -1.4 20,513 - -2.1 20,513 - -1.6 20,513 - -0.8 20,513 - +1.6 20,513 - -0.1 20,513 - -1.4 20,513 - -4.2 20,513 - +3.5 20,513 - -1.1 20,539 + -0.3 20,539 + +1.5 20,677 + GFF6647 0.13 -0.8 20,677 + GFF6647 0.13 +1.2 20,677 + GFF6647 0.13 +1.9 20,678 - GFF6647 0.13 +0.6 20,767 + GFF6647 0.26 -0.2 20,767 + GFF6647 0.26 -0.9 20,768 - GFF6647 0.26 -0.3
Or see this region's nucleotide sequence