Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6607 and GFF6608 are separated by 26 nucleotides GFF6608 and GFF6609 are separated by 83 nucleotides GFF6609 and GFF6610 are separated by 335 nucleotides GFF6610 and GFF6611 are separated by 312 nucleotides
GFF6607 - Plasmid replication initiator protein, at 51,424 to 52,290
GFF6607
GFF6608 - hypothetical protein, at 52,317 to 52,598
GFF6608
GFF6609 - FIG00957806: hypothetical protein, at 52,682 to 53,434
GFF6609
GFF6610 - putative lipoprotein, at 53,770 to 54,120
GFF6610
GFF6611 - Transcriptional regulator, Xre family, at 54,433 to 54,726
GFF6611
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 51.702 kb on - strand, within GFF6607 at 51.749 kb on + strand, within GFF6607 at 51.749 kb on + strand, within GFF6607 at 51.749 kb on + strand, within GFF6607 at 51.749 kb on + strand, within GFF6607 at 51.750 kb on - strand, within GFF6607 at 51.750 kb on - strand, within GFF6607 at 51.750 kb on - strand, within GFF6607 at 51.750 kb on - strand, within GFF6607 at 51.924 kb on - strand, within GFF6607 at 51.939 kb on + strand, within GFF6607 at 51.940 kb on - strand, within GFF6607 at 52.354 kb on + strand, within GFF6608 at 52.420 kb on + strand, within GFF6608 at 52.420 kb on + strand, within GFF6608 at 52.420 kb on + strand, within GFF6608 at 52.420 kb on + strand, within GFF6608 at 52.420 kb on + strand, within GFF6608 at 52.421 kb on - strand, within GFF6608 at 52.421 kb on - strand, within GFF6608 at 52.421 kb on - strand, within GFF6608 at 52.421 kb on - strand, within GFF6608 at 52.507 kb on + strand, within GFF6608 at 52.507 kb on + strand, within GFF6608 at 52.507 kb on + strand, within GFF6608 at 52.534 kb on + strand, within GFF6608 at 52.535 kb on - strand, within GFF6608 at 52.535 kb on - strand, within GFF6608 at 52.535 kb on - strand, within GFF6608 at 52.535 kb on - strand, within GFF6608 at 52.613 kb on + strand at 52.613 kb on + strand at 53.010 kb on + strand, within GFF6609 at 53.010 kb on + strand, within GFF6609 at 53.010 kb on + strand, within GFF6609 at 53.011 kb on - strand, within GFF6609 at 53.011 kb on - strand, within GFF6609 at 53.011 kb on - strand, within GFF6609 at 53.182 kb on - strand, within GFF6609 at 53.343 kb on + strand, within GFF6609 at 53.343 kb on + strand, within GFF6609 at 53.343 kb on + strand, within GFF6609 at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.388 kb on + strand at 53.388 kb on + strand at 53.389 kb on - strand at 53.404 kb on - strand at 53.487 kb on - strand at 53.487 kb on - strand at 53.499 kb on + strand at 53.500 kb on - strand at 53.523 kb on - strand at 53.523 kb on - strand at 53.552 kb on - strand at 53.560 kb on + strand at 53.560 kb on + strand at 53.582 kb on + strand at 53.583 kb on - strand at 53.604 kb on + strand at 53.740 kb on + strand at 53.740 kb on + strand at 53.740 kb on + strand at 53.811 kb on - strand, within GFF6610 at 53.840 kb on + strand, within GFF6610 at 53.840 kb on + strand, within GFF6610 at 53.840 kb on + strand, within GFF6610 at 53.841 kb on - strand, within GFF6610 at 53.986 kb on + strand, within GFF6610 at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 51,702 - GFF6607 0.32 -1.1 51,749 + GFF6607 0.37 -1.3 51,749 + GFF6607 0.37 +0.1 51,749 + GFF6607 0.37 -0.2 51,749 + GFF6607 0.37 -1.8 51,750 - GFF6607 0.38 -1.5 51,750 - GFF6607 0.38 -1.6 51,750 - GFF6607 0.38 -2.5 51,750 - GFF6607 0.38 -0.8 51,924 - GFF6607 0.58 -0.2 51,939 + GFF6607 0.59 -2.9 51,940 - GFF6607 0.60 +1.1 52,354 + GFF6608 0.13 -2.4 52,420 + GFF6608 0.37 -2.0 52,420 + GFF6608 0.37 -0.9 52,420 + GFF6608 0.37 +0.5 52,420 + GFF6608 0.37 -1.5 52,420 + GFF6608 0.37 -3.1 52,421 - GFF6608 0.37 +0.5 52,421 - GFF6608 0.37 +1.1 52,421 - GFF6608 0.37 +0.1 52,421 - GFF6608 0.37 -2.8 52,507 + GFF6608 0.67 -0.5 52,507 + GFF6608 0.67 +0.0 52,507 + GFF6608 0.67 -2.9 52,534 + GFF6608 0.77 -1.1 52,535 - GFF6608 0.77 -2.9 52,535 - GFF6608 0.77 +0.9 52,535 - GFF6608 0.77 -0.2 52,535 - GFF6608 0.77 -0.5 52,613 + -2.2 52,613 + -3.6 53,010 + GFF6609 0.44 -0.5 53,010 + GFF6609 0.44 -1.2 53,010 + GFF6609 0.44 +0.2 53,011 - GFF6609 0.44 -0.7 53,011 - GFF6609 0.44 -0.9 53,011 - GFF6609 0.44 +0.6 53,182 - GFF6609 0.66 -2.1 53,343 + GFF6609 0.88 -0.2 53,343 + GFF6609 0.88 -0.5 53,343 + GFF6609 0.88 -0.7 53,382 + -0.0 53,382 + -0.7 53,382 + +3.1 53,382 + +1.4 53,382 + -1.1 53,382 + -1.9 53,383 - -0.1 53,383 - -2.7 53,383 - -0.0 53,383 - -0.8 53,383 - -0.6 53,383 - -0.7 53,383 - +0.5 53,388 + -2.9 53,388 + -1.4 53,389 - +1.8 53,404 - -3.2 53,487 - +0.2 53,487 - +0.7 53,499 + -1.7 53,500 - +1.1 53,523 - +0.7 53,523 - -2.8 53,552 - +1.3 53,560 + -0.7 53,560 + -0.7 53,582 + +0.3 53,583 - -2.1 53,604 + -0.6 53,740 + +1.6 53,740 + +0.3 53,740 + -0.8 53,811 - GFF6610 0.12 -1.1 53,840 + GFF6610 0.20 +1.1 53,840 + GFF6610 0.20 -0.9 53,840 + GFF6610 0.20 -2.0 53,841 - GFF6610 0.20 -0.1 53,986 + GFF6610 0.62 +1.3 54,192 + +0.2 54,192 + +1.7 54,192 + +0.6 54,192 + +2.1 54,192 + -1.8 54,193 - -2.1 54,193 - -1.2 54,193 - +0.6 54,193 - -0.2 54,311 - -0.1
Or see this region's nucleotide sequence