Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6597 and GFF6598 are separated by 717 nucleotides GFF6598 and GFF6599 are separated by 82 nucleotides GFF6599 and GFF6600 overlap by 4 nucleotides
GFF6597 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 41,177 to 42,478
GFF6597
GFF6598 - Putative formate dehydrogenase oxidoreductase protein, at 43,196 to 45,472
GFF6598
GFF6599 - NAD-dependent formate dehydrogenase alpha subunit, at 45,555 to 45,800
GFF6599
GFF6600 - Sulfur carrier protein FdhD, at 45,797 to 46,732
GFF6600
Position (kb) 43
44
45
46 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 42.222 kb on - strand, within GFF6597 at 42.248 kb on + strand, within GFF6597 at 42.468 kb on + strand at 42.468 kb on + strand at 42.555 kb on + strand at 42.555 kb on + strand at 42.606 kb on + strand at 42.723 kb on - strand at 42.743 kb on + strand at 42.743 kb on + strand at 42.744 kb on - strand at 42.755 kb on + strand at 42.755 kb on + strand at 42.836 kb on - strand at 42.856 kb on + strand at 43.027 kb on + strand at 43.027 kb on + strand at 43.044 kb on - strand at 43.097 kb on - strand at 43.122 kb on - strand at 43.233 kb on - strand at 43.480 kb on + strand, within GFF6598 at 43.480 kb on + strand, within GFF6598 at 43.481 kb on - strand, within GFF6598 at 43.481 kb on - strand, within GFF6598 at 43.655 kb on + strand, within GFF6598 at 43.655 kb on + strand, within GFF6598 at 43.656 kb on - strand, within GFF6598 at 43.656 kb on - strand, within GFF6598 at 43.656 kb on - strand, within GFF6598 at 43.656 kb on - strand, within GFF6598 at 44.030 kb on + strand, within GFF6598 at 44.288 kb on + strand, within GFF6598 at 44.289 kb on - strand, within GFF6598 at 44.976 kb on - strand, within GFF6598 at 44.976 kb on - strand, within GFF6598 at 45.072 kb on + strand, within GFF6598 at 45.072 kb on + strand, within GFF6598 at 45.072 kb on + strand, within GFF6598 at 45.073 kb on - strand, within GFF6598 at 45.073 kb on - strand, within GFF6598 at 45.074 kb on + strand, within GFF6598 at 45.075 kb on - strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.167 kb on + strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.363 kb on - strand at 45.363 kb on - strand at 45.366 kb on - strand at 45.387 kb on + strand at 45.388 kb on - strand at 45.388 kb on - strand at 45.428 kb on + strand at 45.429 kb on - strand at 45.429 kb on - strand at 45.429 kb on - strand at 45.498 kb on + strand at 45.498 kb on + strand at 45.498 kb on + strand at 45.499 kb on - strand at 45.499 kb on - strand at 45.513 kb on + strand at 45.545 kb on + strand at 45.545 kb on + strand at 45.546 kb on - strand at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.726 kb on + strand, within GFF6599 at 45.727 kb on - strand, within GFF6599 at 45.727 kb on - strand, within GFF6599 at 45.811 kb on + strand at 46.031 kb on + strand, within GFF6600 at 46.032 kb on - strand, within GFF6600 at 46.032 kb on - strand, within GFF6600 at 46.170 kb on + strand, within GFF6600
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 42,222 - GFF6597 0.80 -0.6 42,248 + GFF6597 0.82 -1.4 42,468 + +1.1 42,468 + -1.6 42,555 + +1.3 42,555 + -1.1 42,606 + +1.8 42,723 - +2.2 42,743 + +2.1 42,743 + -0.6 42,744 - +1.4 42,755 + +0.9 42,755 + +1.2 42,836 - -0.5 42,856 + +1.8 43,027 + +0.0 43,027 + -1.8 43,044 - +0.6 43,097 - -0.7 43,122 - -0.5 43,233 - -0.8 43,480 + GFF6598 0.12 +0.8 43,480 + GFF6598 0.12 -1.2 43,481 - GFF6598 0.13 -2.9 43,481 - GFF6598 0.13 +0.8 43,655 + GFF6598 0.20 -3.0 43,655 + GFF6598 0.20 +1.6 43,656 - GFF6598 0.20 +0.3 43,656 - GFF6598 0.20 +0.2 43,656 - GFF6598 0.20 -0.5 43,656 - GFF6598 0.20 +0.2 44,030 + GFF6598 0.37 -1.6 44,288 + GFF6598 0.48 -0.7 44,289 - GFF6598 0.48 -0.9 44,976 - GFF6598 0.78 -1.6 44,976 - GFF6598 0.78 +0.4 45,072 + GFF6598 0.82 +1.4 45,072 + GFF6598 0.82 -2.8 45,072 + GFF6598 0.82 +1.2 45,073 - GFF6598 0.82 +0.6 45,073 - GFF6598 0.82 +1.4 45,074 + GFF6598 0.82 -0.2 45,075 - GFF6598 0.83 +0.4 45,152 + GFF6598 0.86 -0.0 45,152 + GFF6598 0.86 -1.2 45,152 + GFF6598 0.86 -2.4 45,152 + GFF6598 0.86 -0.3 45,152 + GFF6598 0.86 +1.1 45,153 - GFF6598 0.86 -1.1 45,153 - GFF6598 0.86 -2.6 45,153 - GFF6598 0.86 +0.1 45,153 - GFF6598 0.86 -0.3 45,167 + GFF6598 0.87 +1.8 45,168 - GFF6598 0.87 -1.4 45,168 - GFF6598 0.87 -1.1 45,168 - GFF6598 0.87 -2.5 45,168 - GFF6598 0.87 +0.5 45,363 - +1.4 45,363 - -2.0 45,366 - -2.1 45,387 + -0.9 45,388 - -0.9 45,388 - +0.3 45,428 + +2.4 45,429 - -0.2 45,429 - -0.3 45,429 - -1.4 45,498 + -0.0 45,498 + -1.0 45,498 + -0.7 45,499 - -0.0 45,499 - +2.1 45,513 + +0.2 45,545 + -1.7 45,545 + -1.2 45,546 - +1.8 45,666 + GFF6599 0.45 -2.1 45,666 + GFF6599 0.45 -0.5 45,666 + GFF6599 0.45 +0.2 45,666 + GFF6599 0.45 -3.9 45,666 + GFF6599 0.45 -1.1 45,667 - GFF6599 0.46 -0.3 45,667 - GFF6599 0.46 +2.3 45,667 - GFF6599 0.46 -0.9 45,667 - GFF6599 0.46 -0.7 45,726 + GFF6599 0.70 +0.4 45,727 - GFF6599 0.70 +1.5 45,727 - GFF6599 0.70 -1.1 45,811 + -2.5 46,031 + GFF6600 0.25 +0.3 46,032 - GFF6600 0.25 -0.7 46,032 - GFF6600 0.25 +0.9 46,170 + GFF6600 0.40 -0.2
Or see this region's nucleotide sequence