Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF652 and GFF653 overlap by 4 nucleotides GFF653 and GFF654 are separated by 156 nucleotides GFF654 and GFF655 are separated by 18 nucleotides GFF655 and GFF656 are separated by 14 nucleotides
GFF652 - bacteriophytochrome heme oxygenase BphO, at 704,267 to 704,905
GFF652
GFF653 - no description, at 704,902 to 705,318
GFF653
GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236
GFF654
GFF655 - hypothetical protein, at 706,255 to 706,674
GFF655
GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935
GFF656
Position (kb) 705
706
707 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.645 kb on + strand, within GFF652 at 704.646 kb on - strand, within GFF652 at 704.778 kb on + strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.357 kb on + strand at 705.357 kb on + strand at 705.358 kb on - strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.414 kb on - strand at 705.414 kb on - strand at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.814 kb on + strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 706.243 kb on + strand at 706.265 kb on + strand at 706.265 kb on + strand at 706.266 kb on - strand at 706.289 kb on + strand at 706.500 kb on - strand, within GFF655 at 706.500 kb on - strand, within GFF655 at 706.500 kb on - strand, within GFF655 at 706.562 kb on + strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.699 kb on + strand at 706.747 kb on + strand at 706.748 kb on - strand at 706.856 kb on - strand at 706.984 kb on + strand, within GFF656 at 706.984 kb on + strand, within GFF656 at 706.985 kb on - strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 704,521 - GFF652 0.40 +1.1 704,521 - GFF652 0.40 +2.1 704,521 - GFF652 0.40 -0.9 704,521 - GFF652 0.40 -2.8 704,521 - GFF652 0.40 -0.8 704,645 + GFF652 0.59 -1.4 704,646 - GFF652 0.59 -1.8 704,778 + GFF652 0.80 +2.3 704,779 - GFF652 0.80 -0.0 704,779 - GFF652 0.80 -3.1 704,779 - GFF652 0.80 -1.5 705,059 + GFF653 0.38 -0.8 705,059 + GFF653 0.38 -1.9 705,059 + GFF653 0.38 -0.2 705,059 + GFF653 0.38 -2.0 705,059 + GFF653 0.38 +0.0 705,060 - GFF653 0.38 -3.5 705,060 - GFF653 0.38 -1.1 705,060 - GFF653 0.38 -1.9 705,060 - GFF653 0.38 -3.9 705,357 + -0.5 705,357 + +0.6 705,358 - -1.6 705,397 + +0.0 705,397 + -0.5 705,397 + -0.8 705,398 - -1.1 705,398 - -1.6 705,398 - -0.2 705,398 - -0.4 705,398 - +1.0 705,398 - -0.1 705,413 + +2.4 705,413 + -0.4 705,413 + +0.1 705,414 - -1.0 705,414 - -1.4 705,793 + GFF654 0.42 +1.8 705,793 + GFF654 0.42 -2.4 705,793 + GFF654 0.42 -1.4 705,793 + GFF654 0.42 +1.8 705,794 - GFF654 0.42 -2.5 705,794 - GFF654 0.42 -3.4 705,794 - GFF654 0.42 +2.3 705,794 - GFF654 0.42 -0.0 705,814 + GFF654 0.44 -1.4 705,815 - GFF654 0.45 -3.5 705,815 - GFF654 0.45 +1.0 705,815 - GFF654 0.45 +1.3 705,901 + GFF654 0.56 -1.1 705,901 + GFF654 0.56 +0.4 706,243 + +2.3 706,265 + +0.8 706,265 + +1.2 706,266 - -0.1 706,289 + -1.0 706,500 - GFF655 0.58 +0.7 706,500 - GFF655 0.58 +0.3 706,500 - GFF655 0.58 -0.2 706,562 + GFF655 0.73 -0.4 706,563 - GFF655 0.73 -1.9 706,563 - GFF655 0.73 -1.2 706,563 - GFF655 0.73 -2.3 706,563 - GFF655 0.73 -1.7 706,699 + -1.2 706,747 + -0.2 706,748 - -0.5 706,856 - -3.3 706,984 + GFF656 0.13 -4.2 706,984 + GFF656 0.13 -1.7 706,985 - GFF656 0.13 -1.5 706,996 + GFF656 0.14 -0.2 706,996 + GFF656 0.14 -1.4 706,996 + GFF656 0.14 +0.8 706,997 - GFF656 0.14 -2.1 706,997 - GFF656 0.14 +0.2 706,997 - GFF656 0.14 -1.8 706,997 - GFF656 0.14 -0.5 706,999 + GFF656 0.14 -0.2 706,999 + GFF656 0.14 -0.2 706,999 + GFF656 0.14 +0.8 706,999 + GFF656 0.14 -1.0 707,000 - GFF656 0.14 +1.1 707,000 - GFF656 0.14 -2.0 707,000 - GFF656 0.14 -1.8 707,188 + GFF656 0.22 -0.6 707,188 + GFF656 0.22 +0.4 707,188 + GFF656 0.22 +1.8 707,188 + GFF656 0.22 +0.8 707,189 - GFF656 0.22 -1.2 707,189 - GFF656 0.22 +0.6 707,189 - GFF656 0.22 -0.8 707,189 - GFF656 0.22 -0.6 707,189 - GFF656 0.22 +0.2
Or see this region's nucleotide sequence