Strain Fitness in Variovorax sp. SCN45 around GFF649

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF648 and GFF649 are separated by 13 nucleotidesGFF649 and GFF650 overlap by 8 nucleotidesGFF650 and GFF651 overlap by 8 nucleotides GFF648 - integral membrane sensor signal transduction histidine kinase, at 697,396 to 698,895 GFF648 GFF649 - no description, at 698,909 to 701,443 GFF649 GFF650 - Response regulator, at 701,436 to 701,894 GFF650 GFF651 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 701,887 to 704,175 GFF651 Position (kb) 698 699 700 701 702Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 697.939 kb on + strand, within GFF648at 697.942 kb on + strand, within GFF648at 697.942 kb on + strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 698.554 kb on + strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.910 kb on + strandat 698.910 kb on + strandat 698.911 kb on - strandat 699.205 kb on - strand, within GFF649at 699.205 kb on - strand, within GFF649at 699.205 kb on - strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.358 kb on - strand, within GFF649at 699.358 kb on - strand, within GFF649at 699.373 kb on + strand, within GFF649at 699.373 kb on + strand, within GFF649at 699.374 kb on - strand, within GFF649at 699.393 kb on + strand, within GFF649at 699.393 kb on + strand, within GFF649at 699.394 kb on - strand, within GFF649at 699.394 kb on - strand, within GFF649at 699.394 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.912 kb on + strand, within GFF649at 699.912 kb on + strand, within GFF649at 699.912 kb on + strand, within GFF649at 699.913 kb on - strand, within GFF649at 700.128 kb on + strand, within GFF649at 700.128 kb on + strand, within GFF649at 700.128 kb on + strand, within GFF649at 700.128 kb on + strand, within GFF649at 700.128 kb on + strand, within GFF649at 700.129 kb on - strand, within GFF649at 700.129 kb on - strand, within GFF649at 700.362 kb on + strand, within GFF649at 700.425 kb on + strand, within GFF649at 700.426 kb on - strand, within GFF649at 700.584 kb on + strand, within GFF649at 700.584 kb on + strand, within GFF649at 700.584 kb on + strand, within GFF649at 700.584 kb on + strand, within GFF649at 700.585 kb on - strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.741 kb on - strand, within GFF649at 700.741 kb on - strand, within GFF649at 700.741 kb on - strand, within GFF649at 701.103 kb on + strand, within GFF649at 701.103 kb on + strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.241 kb on + strandat 701.241 kb on + strandat 701.438 kb on - strandat 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.768 kb on - strand, within GFF650at 701.888 kb on + strandat 701.888 kb on + strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.120 kb on - strand, within GFF651at 702.120 kb on - strand, within GFF651

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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697,939 + GFF648 0.36 +1.0
697,942 + GFF648 0.36 +0.5
697,942 + GFF648 0.36 -1.6
697,943 - GFF648 0.36 -1.2
697,943 - GFF648 0.36 -1.6
697,943 - GFF648 0.36 -1.4
697,943 - GFF648 0.36 -0.8
697,943 - GFF648 0.36 -1.0
697,943 - GFF648 0.36 -3.2
697,943 - GFF648 0.36 -2.4
697,943 - GFF648 0.36 +0.2
698,554 + GFF648 0.77 -1.6
698,555 - GFF648 0.77 -2.4
698,555 - GFF648 0.77 -0.2
698,555 - GFF648 0.77 -1.8
698,555 - GFF648 0.77 -1.4
698,910 + -2.4
698,910 + +0.5
698,911 - +1.0
699,205 - GFF649 0.12 -0.4
699,205 - GFF649 0.12 -2.3
699,205 - GFF649 0.12 -3.6
699,357 + GFF649 0.18 -0.2
699,357 + GFF649 0.18 -1.8
699,357 + GFF649 0.18 -0.2
699,357 + GFF649 0.18 +0.8
699,358 - GFF649 0.18 -1.0
699,358 - GFF649 0.18 +0.4
699,373 + GFF649 0.18 -3.0
699,373 + GFF649 0.18 +0.2
699,374 - GFF649 0.18 -3.2
699,393 + GFF649 0.19 -1.9
699,393 + GFF649 0.19 -0.2
699,394 - GFF649 0.19 -4.2
699,394 - GFF649 0.19 +0.4
699,394 - GFF649 0.19 +1.3
699,433 - GFF649 0.21 +1.0
699,433 - GFF649 0.21 +0.4
699,433 - GFF649 0.21 -0.5
699,433 - GFF649 0.21 -0.8
699,433 - GFF649 0.21 -2.6
699,433 - GFF649 0.21 -2.2
699,433 - GFF649 0.21 -1.2
699,433 - GFF649 0.21 -0.8
699,558 + GFF649 0.26 -1.8
699,558 + GFF649 0.26 +0.8
699,558 + GFF649 0.26 -2.0
699,558 + GFF649 0.26 -2.3
699,558 + GFF649 0.26 -1.2
699,558 + GFF649 0.26 +0.5
699,559 - GFF649 0.26 -1.8
699,559 - GFF649 0.26 -3.7
699,559 - GFF649 0.26 -1.0
699,559 - GFF649 0.26 +2.4
699,559 - GFF649 0.26 +1.4
699,559 - GFF649 0.26 -1.9
699,559 - GFF649 0.26 -0.2
699,559 - GFF649 0.26 -1.8
699,912 + GFF649 0.40 +0.5
699,912 + GFF649 0.40 -1.0
699,912 + GFF649 0.40 -1.0
699,913 - GFF649 0.40 -2.9
700,128 + GFF649 0.48 +0.0
700,128 + GFF649 0.48 -0.5
700,128 + GFF649 0.48 -0.5
700,128 + GFF649 0.48 -2.7
700,128 + GFF649 0.48 +2.2
700,129 - GFF649 0.48 -0.8
700,129 - GFF649 0.48 -0.6
700,362 + GFF649 0.57 -0.2
700,425 + GFF649 0.60 -0.1
700,426 - GFF649 0.60 -0.2
700,584 + GFF649 0.66 +3.5
700,584 + GFF649 0.66 +0.8
700,584 + GFF649 0.66 +0.5
700,584 + GFF649 0.66 -1.4
700,585 - GFF649 0.66 -3.6
700,740 + GFF649 0.72 -0.1
700,740 + GFF649 0.72 +1.1
700,740 + GFF649 0.72 -1.4
700,740 + GFF649 0.72 -1.2
700,741 - GFF649 0.72 +1.8
700,741 - GFF649 0.72 +0.4
700,741 - GFF649 0.72 -2.1
701,103 + GFF649 0.87 -1.9
701,103 + GFF649 0.87 -0.4
701,104 - GFF649 0.87 -0.1
701,104 - GFF649 0.87 -0.2
701,104 - GFF649 0.87 -2.0
701,241 + -1.1
701,241 + -0.3
701,438 - -1.1
701,557 + GFF650 0.26 -2.5
701,557 + GFF650 0.26 +0.4
701,557 + GFF650 0.26 +1.4
701,557 + GFF650 0.26 -1.0
701,557 + GFF650 0.26 +0.1
701,557 + GFF650 0.26 +1.1
701,557 + GFF650 0.26 -1.2
701,558 - GFF650 0.27 -2.7
701,558 - GFF650 0.27 +1.4
701,558 - GFF650 0.27 -1.6
701,558 - GFF650 0.27 +0.1
701,558 - GFF650 0.27 -0.3
701,579 - GFF650 0.31 -1.8
701,579 - GFF650 0.31 -1.7
701,579 - GFF650 0.31 -0.3
701,767 + GFF650 0.72 +0.0
701,767 + GFF650 0.72 -2.8
701,767 + GFF650 0.72 -1.2
701,768 - GFF650 0.72 +0.5
701,888 + -0.8
701,888 + -2.1
701,889 - -0.2
701,889 - -2.6
701,889 - +0.2
701,889 - -0.2
701,889 - -2.4
702,119 + GFF651 0.10 -1.0
702,119 + GFF651 0.10 -1.4
702,119 + GFF651 0.10 -2.6
702,119 + GFF651 0.10 +0.8
702,119 + GFF651 0.10 -2.2
702,119 + GFF651 0.10 +0.2
702,120 - GFF651 0.10 -1.0
702,120 - GFF651 0.10 -1.0

Or see this region's nucleotide sequence