Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6369 and GFF6370 are separated by 96 nucleotides GFF6370 and GFF6371 are separated by 68 nucleotides GFF6371 and GFF6372 are separated by 24 nucleotides GFF6372 and GFF6373 are separated by 87 nucleotides
GFF6369 - T6SS associated component TagJ (ImpE), at 38,695 to 39,558
GFF6369
GFF6370 - T6SS component Hcp, at 39,655 to 40,119
GFF6370
GFF6371 - T6SS component TssC (ImpC/VipB), at 40,188 to 41,696
GFF6371
GFF6372 - T6SS component TssB (ImpB/VipA), at 41,721 to 42,293
GFF6372
GFF6373 - T6SS component TssA (ImpA), at 42,381 to 43,472
GFF6373
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 39.767 kb on + strand, within GFF6370 at 39.767 kb on + strand, within GFF6370 at 39.767 kb on + strand, within GFF6370 at 40.155 kb on - strand at 40.261 kb on + strand at 40.261 kb on + strand at 40.262 kb on - strand at 40.396 kb on + strand, within GFF6371 at 40.396 kb on + strand, within GFF6371 at 40.396 kb on + strand, within GFF6371 at 40.483 kb on + strand, within GFF6371 at 40.513 kb on + strand, within GFF6371 at 40.513 kb on + strand, within GFF6371 at 40.561 kb on + strand, within GFF6371 at 40.561 kb on + strand, within GFF6371 at 40.562 kb on - strand, within GFF6371 at 40.976 kb on - strand, within GFF6371 at 41.383 kb on + strand, within GFF6371 at 41.881 kb on + strand, within GFF6372 at 41.881 kb on + strand, within GFF6372 at 41.882 kb on - strand, within GFF6372 at 42.202 kb on + strand, within GFF6372 at 42.217 kb on + strand, within GFF6372 at 42.294 kb on - strand at 42.429 kb on + strand at 42.597 kb on + strand, within GFF6373 at 42.654 kb on - strand, within GFF6373
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 39,767 + GFF6370 0.24 -0.2 39,767 + GFF6370 0.24 -2.4 39,767 + GFF6370 0.24 +0.4 40,155 - -1.8 40,261 + -0.4 40,261 + -2.2 40,262 - +0.4 40,396 + GFF6371 0.14 -1.6 40,396 + GFF6371 0.14 +1.2 40,396 + GFF6371 0.14 -1.2 40,483 + GFF6371 0.20 -0.8 40,513 + GFF6371 0.22 -1.9 40,513 + GFF6371 0.22 -0.4 40,561 + GFF6371 0.25 -0.7 40,561 + GFF6371 0.25 -0.7 40,562 - GFF6371 0.25 +1.2 40,976 - GFF6371 0.52 -0.3 41,383 + GFF6371 0.79 -2.0 41,881 + GFF6372 0.28 -0.0 41,881 + GFF6372 0.28 +0.2 41,882 - GFF6372 0.28 -0.6 42,202 + GFF6372 0.84 +0.5 42,217 + GFF6372 0.87 +0.4 42,294 - +0.8 42,429 + -0.1 42,597 + GFF6373 0.20 -2.4 42,654 - GFF6373 0.25 -1.4
Or see this region's nucleotide sequence