Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6262 and GFF6263 overlap by 8 nucleotides GFF6263 and GFF6264 overlap by 4 nucleotides GFF6264 and GFF6265 overlap by 19 nucleotides GFF6265 and GFF6266 are separated by 21 nucleotides
GFF6262 - Transcriptional regulator PhnF, at 54,655 to 55,410
GFF6262
GFF6263 - Uncharacterized protein Atu0170, clustered with phosphonate utilization, at 55,403 to 56,137
GFF6263
GFF6264 - Ribose 1,5-bisphosphate phosphokinase PhnN (EC 2.7.4.23), at 56,134 to 56,727
GFF6264
GFF6265 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 56,709 to 57,665
GFF6265
GFF6266 - putative lipoprotein, at 57,687 to 58,367
GFF6266
Position (kb) 56
57 Strain fitness (log2 ratio) -1
0
1
2 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.352 kb on - strand at 55.917 kb on - strand, within GFF6263 at 56.152 kb on + strand at 56.152 kb on + strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.368 kb on + strand, within GFF6264 at 56.369 kb on - strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.441 kb on - strand, within GFF6264 at 56.592 kb on - strand, within GFF6264 at 56.697 kb on + strand at 56.697 kb on + strand at 56.698 kb on - strand at 56.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 55,216 + GFF6262 0.74 +1.8 55,216 + GFF6262 0.74 +1.9 55,216 + GFF6262 0.74 -1.5 55,216 + GFF6262 0.74 +1.5 55,352 - +1.0 55,917 - GFF6263 0.70 +0.4 56,152 + -1.2 56,152 + -0.0 56,153 - -0.0 56,153 - -1.2 56,153 - -1.1 56,368 + GFF6264 0.39 +0.5 56,369 - GFF6264 0.40 +0.5 56,440 + GFF6264 0.52 -0.3 56,440 + GFF6264 0.52 +2.4 56,441 - GFF6264 0.52 -1.3 56,592 - GFF6264 0.77 -0.6 56,697 + +0.7 56,697 + -1.7 56,698 - +0.1 56,698 - -0.4
Or see this region's nucleotide sequence