Strain Fitness in Variovorax sp. SCN45 around GFF6213

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
119,178	+		GFF6211	0.82	-0.8
119,178	+		GFF6211	0.82	-0.6
119,178	+		GFF6211	0.82	-0.4
119,178	+		GFF6211	0.82	-3.3
119,178	+		GFF6211	0.82	-0.8
119,178	+		GFF6211	0.82	-1.7
119,179	-		GFF6211	0.82	-1.0
119,179	-		GFF6211	0.82	-3.3
119,267	+				-0.9
119,267	+				+2.8
119,267	+				-1.6
119,267	+				-0.1
119,267	+				-1.1
119,268	-				+1.5
119,268	-				-1.6
119,268	-				+1.9
119,268	-				-0.1
119,268	-				+0.1
119,268	-				-2.9
119,268	-				-0.1
119,268	-				+0.4
119,268	-				-1.0
119,268	-				-1.4
119,526	-				-0.6
119,661	+		GFF6212	0.41	-0.1
119,661	+		GFF6212	0.41	-0.1
119,661	+		GFF6212	0.41	+2.2
119,661	+		GFF6212	0.41	-2.3
119,661	+		GFF6212	0.41	-1.8
119,661	+		GFF6212	0.41	+0.5
119,661	+		GFF6212	0.41	-1.5
119,662	-		GFF6212	0.41	+1.4
119,662	-		GFF6212	0.41	-2.2
119,662	-		GFF6212	0.41	-0.9
119,722	-		GFF6212	0.56	-0.4
119,762	-		GFF6212	0.65	+2.9
119,762	-		GFF6212	0.65	-1.7
119,913	+				-0.4
119,947	+				+0.9
119,948	-				-3.8
120,063	+				-0.3
120,245	+		GFF6213	0.19	-0.4
120,245	+		GFF6213	0.19	+1.7
120,245	+		GFF6213	0.19	-1.1
120,245	+		GFF6213	0.19	-0.6
120,245	+		GFF6213	0.19	-0.8
120,245	+		GFF6213	0.19	+1.8
120,245	+		GFF6213	0.19	-1.5
120,245	+		GFF6213	0.19	-2.8
120,245	+		GFF6213	0.19	-1.3
120,245	+		GFF6213	0.19	+1.2
120,245	+		GFF6213	0.19	+4.0
120,245	+		GFF6213	0.19	-1.8
120,245	+		GFF6213	0.19	-0.7
120,245	+		GFF6213	0.19	+0.2
120,245	+		GFF6213	0.19	-0.1
120,245	+		GFF6213	0.19	+1.0
120,245	+		GFF6213	0.19	+1.2
120,246	-		GFF6213	0.19	-3.1
120,246	-		GFF6213	0.19	-2.6
120,246	-		GFF6213	0.19	-0.6
120,246	-		GFF6213	0.19	-1.3
120,246	-		GFF6213	0.19	-2.5
120,246	-		GFF6213	0.19	-2.1
120,246	-		GFF6213	0.19	-0.2
120,246	-		GFF6213	0.19	-1.3
120,246	-		GFF6213	0.19	-2.0
120,246	-		GFF6213	0.19	-2.0
120,246	-		GFF6213	0.19	-1.9
120,246	-		GFF6213	0.19	-2.5
120,246	-		GFF6213	0.19	-2.6
120,246	-		GFF6213	0.19	-1.0
120,246	-		GFF6213	0.19	-4.8
120,246	-		GFF6213	0.19	-1.4
120,257	+		GFF6213	0.20	-1.8
120,257	+		GFF6213	0.20	+0.9
120,257	+		GFF6213	0.20	+0.6
120,258	-		GFF6213	0.20	-1.3
120,296	+		GFF6213	0.23	+0.9
120,296	+		GFF6213	0.23	+0.7
120,296	+		GFF6213	0.23	+0.6
120,296	+		GFF6213	0.23	+0.9
120,297	-		GFF6213	0.24	+0.3
120,297	-		GFF6213	0.24	-2.6
120,298	+		GFF6213	0.24	+0.8
120,298	+		GFF6213	0.24	-0.6
120,298	+		GFF6213	0.24	-3.2
120,299	-		GFF6213	0.24	-3.5
120,299	-		GFF6213	0.24	-2.6
120,299	-		GFF6213	0.24	-0.9
120,578	+		GFF6213	0.50	-0.3
120,578	+		GFF6213	0.50	-0.1
120,579	-		GFF6213	0.50	-0.4
120,579	-		GFF6213	0.50	-2.9
120,579	-		GFF6213	0.50	-0.4
120,579	-		GFF6213	0.50	-3.2
120,668	+		GFF6213	0.59	+0.8
120,669	-		GFF6213	0.59	-1.7
120,669	-		GFF6213	0.59	-2.5
120,794	+		GFF6213	0.71	+0.8
120,794	+		GFF6213	0.71	-2.3
120,795	-		GFF6213	0.71	-1.1
120,795	-		GFF6213	0.71	-0.1
120,795	-		GFF6213	0.71	-0.1
120,870	+		GFF6213	0.78	+0.1
120,870	+		GFF6213	0.78	-0.9
120,870	+		GFF6213	0.78	-0.1
120,871	-		GFF6213	0.78	-0.6
120,871	-		GFF6213	0.78	-0.5
120,871	-		GFF6213	0.78	-0.5
120,950	+		GFF6213	0.86	-0.6
120,950	+		GFF6213	0.86	-0.4
120,950	+		GFF6213	0.86	-2.2
120,950	+		GFF6213	0.86	-0.2
120,950	+		GFF6213	0.86	+0.5
120,950	+		GFF6213	0.86	-3.8
120,951	-		GFF6213	0.86	-0.1
120,951	-		GFF6213	0.86	-1.8
120,951	-		GFF6213	0.86	-3.6
120,951	-		GFF6213	0.86	-1.7
120,951	-		GFF6213	0.86	-1.0
120,951	-		GFF6213	0.86	+1.2
120,951	-		GFF6213	0.86	-3.1
120,965	+		GFF6213	0.87	-1.1
120,966	-		GFF6213	0.87	-0.8
120,966	-		GFF6213	0.87	-2.0
120,966	-		GFF6213	0.87	-1.3
121,420	+		GFF6214	0.31	+0.1
121,421	-		GFF6214	0.31	+2.4
121,421	-		GFF6214	0.31	-1.0
121,421	-		GFF6214	0.31	-1.6
121,421	-		GFF6214	0.31	-0.8
121,421	-		GFF6214	0.31	+2.7
121,421	-		GFF6214	0.31	-0.3
121,421	-		GFF6214	0.31	+2.3
121,429	+		GFF6214	0.32	-1.1
121,429	+		GFF6214	0.32	-0.8
121,429	+		GFF6214	0.32	-0.3
121,429	+		GFF6214	0.32	-0.2
121,429	+		GFF6214	0.32	-1.2
121,429	+		GFF6214	0.32	-0.1
121,430	-		GFF6214	0.32	-1.6
121,430	-		GFF6214	0.32	-1.7
121,430	-		GFF6214	0.32	-0.1
121,430	-		GFF6214	0.32	-0.9
121,430	-		GFF6214	0.32	-0.4
121,430	-		GFF6214	0.32	-0.0
121,430	-		GFF6214	0.32	+0.0
121,489	+		GFF6214	0.38	+1.3
121,489	+		GFF6214	0.38	-1.3
121,490	-		GFF6214	0.38	-2.0
121,490	-		GFF6214	0.38	+1.8
121,490	-		GFF6214	0.38	-0.7
121,513	+		GFF6214	0.40	+1.2
121,514	-		GFF6214	0.40	+2.6
121,591	+		GFF6214	0.48	+0.5
121,591	+		GFF6214	0.48	-0.5
121,592	-		GFF6214	0.49	+0.3
121,592	-		GFF6214	0.49	-1.9
121,592	-		GFF6214	0.49	-0.9
121,593	+		GFF6214	0.49	-1.7
121,593	+		GFF6214	0.49	+1.6
121,593	+		GFF6214	0.49	-0.1
121,593	+		GFF6214	0.49	-1.3
121,702	+		GFF6214	0.60	-2.3
121,702	+		GFF6214	0.60	-0.8
121,703	-		GFF6214	0.60	+2.5
121,703	-		GFF6214	0.60	-0.8
121,703	-		GFF6214	0.60	+2.2
121,703	-		GFF6214	0.60	-1.0
121,703	-		GFF6214	0.60	+0.0
121,703	-		GFF6214	0.60	-2.6
121,703	-		GFF6214	0.60	-1.3
121,703	-		GFF6214	0.60	+1.0
121,703	-		GFF6214	0.60	-1.1
121,703	-		GFF6214	0.60	-0.2
121,703	-		GFF6214	0.60	+1.2
121,703	-		GFF6214	0.60	-1.9
121,871	+		GFF6214	0.78	-0.1
121,871	+		GFF6214	0.78	-0.3
121,871	+		GFF6214	0.78	+0.6
121,872	-		GFF6214	0.78	-2.1
121,872	-		GFF6214	0.78	+1.2
121,872	-		GFF6214	0.78	+0.0