Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6162 and GFF6163 are separated by 11 nucleotides GFF6163 and GFF6164 are separated by 4 nucleotides
GFF6162 - Dihydrodipicolinate synthase family protein RB7999, at 67,753 to 68,820
GFF6162
GFF6163 - hypothetical protein, at 68,832 to 69,686
GFF6163
GFF6164 - FIG01094124: hypothetical protein, at 69,691 to 70,740
GFF6164
Position (kb) 68
69
70 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.123 kb on - strand, within GFF6162 at 68.370 kb on - strand, within GFF6162 at 68.475 kb on - strand, within GFF6162 at 68.606 kb on + strand, within GFF6162 at 68.607 kb on - strand, within GFF6162 at 68.684 kb on + strand, within GFF6162 at 68.685 kb on - strand, within GFF6162 at 69.343 kb on + strand, within GFF6163 at 69.343 kb on + strand, within GFF6163 at 69.343 kb on + strand, within GFF6163 at 69.344 kb on - strand, within GFF6163 at 69.344 kb on - strand, within GFF6163 at 69.344 kb on - strand, within GFF6163 at 69.695 kb on + strand at 69.695 kb on + strand at 69.695 kb on + strand at 69.696 kb on - strand at 69.696 kb on - strand at 69.734 kb on + strand at 69.735 kb on - strand at 69.735 kb on - strand at 69.890 kb on + strand, within GFF6164 at 69.890 kb on + strand, within GFF6164 at 69.890 kb on + strand, within GFF6164 at 69.891 kb on - strand, within GFF6164 at 69.891 kb on - strand, within GFF6164 at 70.115 kb on + strand, within GFF6164 at 70.115 kb on + strand, within GFF6164 at 70.116 kb on - strand, within GFF6164 at 70.116 kb on - strand, within GFF6164 at 70.116 kb on - strand, within GFF6164 at 70.116 kb on - strand, within GFF6164 at 70.116 kb on - strand, within GFF6164 at 70.163 kb on + strand, within GFF6164 at 70.163 kb on + strand, within GFF6164 at 70.164 kb on - strand, within GFF6164 at 70.203 kb on - strand, within GFF6164 at 70.203 kb on - strand, within GFF6164 at 70.268 kb on + strand, within GFF6164 at 70.668 kb on - strand at 70.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 68,122 + GFF6162 0.35 +0.9 68,122 + GFF6162 0.35 -1.7 68,122 + GFF6162 0.35 +0.2 68,122 + GFF6162 0.35 -1.0 68,123 - GFF6162 0.35 +0.3 68,370 - GFF6162 0.58 +0.2 68,475 - GFF6162 0.68 -1.5 68,606 + GFF6162 0.80 +0.8 68,607 - GFF6162 0.80 +2.7 68,684 + GFF6162 0.87 +1.8 68,685 - GFF6162 0.87 -0.9 69,343 + GFF6163 0.60 -1.5 69,343 + GFF6163 0.60 -2.1 69,343 + GFF6163 0.60 +0.9 69,344 - GFF6163 0.60 -1.9 69,344 - GFF6163 0.60 -1.5 69,344 - GFF6163 0.60 -1.0 69,695 + -0.1 69,695 + -1.3 69,695 + +0.3 69,696 - -2.6 69,696 - +0.5 69,734 + +1.8 69,735 - -1.9 69,735 - +0.3 69,890 + GFF6164 0.19 +0.2 69,890 + GFF6164 0.19 -1.0 69,890 + GFF6164 0.19 -0.4 69,891 - GFF6164 0.19 -2.6 69,891 - GFF6164 0.19 -2.3 70,115 + GFF6164 0.40 -1.6 70,115 + GFF6164 0.40 -1.8 70,116 - GFF6164 0.40 +0.9 70,116 - GFF6164 0.40 +1.8 70,116 - GFF6164 0.40 -1.1 70,116 - GFF6164 0.40 +1.3 70,116 - GFF6164 0.40 +2.2 70,163 + GFF6164 0.45 -3.1 70,163 + GFF6164 0.45 -0.8 70,164 - GFF6164 0.45 -0.1 70,203 - GFF6164 0.49 -0.4 70,203 - GFF6164 0.49 -3.3 70,268 + GFF6164 0.55 +1.2 70,668 - -0.7 70,668 - -0.8
Or see this region's nucleotide sequence