Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6147 and GFF6148 are separated by 6 nucleotides GFF6148 and GFF6149 are separated by 38 nucleotides GFF6149 and GFF6150 are separated by 21 nucleotides
GFF6147 - Phosphonoacetaldehyde dehydrogenase (NAD+), at 51,511 to 52,959
GFF6147
GFF6148 - hypothetical protein, at 52,966 to 53,532
GFF6148
GFF6149 - FAD-dependent oxidoreductase, at 53,571 to 54,959
GFF6149
GFF6150 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 54,981 to 56,336
GFF6150
Position (kb) 53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 52.607 kb on - strand, within GFF6147 at 52.607 kb on - strand, within GFF6147 at 52.761 kb on + strand, within GFF6147 at 53.023 kb on + strand, within GFF6148 at 53.476 kb on + strand at 53.476 kb on + strand at 53.476 kb on + strand at 53.477 kb on - strand at 53.477 kb on - strand at 53.480 kb on - strand at 53.492 kb on + strand at 53.695 kb on + strand at 53.695 kb on + strand at 54.025 kb on - strand, within GFF6149 at 54.091 kb on - strand, within GFF6149 at 54.091 kb on - strand, within GFF6149 at 54.244 kb on + strand, within GFF6149 at 54.245 kb on - strand, within GFF6149 at 54.424 kb on - strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.427 kb on - strand, within GFF6149 at 54.427 kb on - strand, within GFF6149 at 54.427 kb on - strand, within GFF6149 at 54.430 kb on - strand, within GFF6149 at 54.528 kb on + strand, within GFF6149 at 54.528 kb on + strand, within GFF6149 at 54.529 kb on - strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.714 kb on + strand, within GFF6149 at 54.714 kb on + strand, within GFF6149 at 54.714 kb on + strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.825 kb on + strand at 54.825 kb on + strand at 54.825 kb on + strand at 55.093 kb on + strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.129 kb on + strand, within GFF6150 at 55.345 kb on + strand, within GFF6150 at 55.346 kb on - strand, within GFF6150 at 55.351 kb on + strand, within GFF6150 at 55.351 kb on + strand, within GFF6150 at 55.375 kb on + strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.408 kb on + strand, within GFF6150 at 55.408 kb on + strand, within GFF6150 at 55.409 kb on - strand, within GFF6150 at 55.606 kb on + strand, within GFF6150 at 55.852 kb on + strand, within GFF6150 at 55.853 kb on - strand, within GFF6150 at 55.853 kb on - strand, within GFF6150 at 55.853 kb on - strand, within GFF6150
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 52,607 - GFF6147 0.76 +1.3 52,607 - GFF6147 0.76 +0.6 52,761 + GFF6147 0.86 +0.7 53,023 + GFF6148 0.10 -1.0 53,476 + +1.9 53,476 + -0.3 53,476 + -1.1 53,477 - -2.3 53,477 - -0.4 53,480 - +1.6 53,492 + -1.6 53,695 + +0.2 53,695 + +0.1 54,025 - GFF6149 0.33 +0.4 54,091 - GFF6149 0.37 +2.2 54,091 - GFF6149 0.37 -1.9 54,244 + GFF6149 0.48 +0.5 54,245 - GFF6149 0.49 +0.9 54,424 - GFF6149 0.61 -0.1 54,426 + GFF6149 0.62 -1.4 54,426 + GFF6149 0.62 -0.1 54,426 + GFF6149 0.62 -0.6 54,426 + GFF6149 0.62 -0.8 54,427 - GFF6149 0.62 +1.9 54,427 - GFF6149 0.62 -0.8 54,427 - GFF6149 0.62 +0.6 54,430 - GFF6149 0.62 +0.8 54,528 + GFF6149 0.69 +1.9 54,528 + GFF6149 0.69 -3.0 54,529 - GFF6149 0.69 -0.2 54,672 + GFF6149 0.79 -0.8 54,672 + GFF6149 0.79 +0.6 54,672 + GFF6149 0.79 -1.7 54,672 + GFF6149 0.79 +1.8 54,672 + GFF6149 0.79 +1.9 54,672 + GFF6149 0.79 +0.3 54,673 - GFF6149 0.79 -0.0 54,673 - GFF6149 0.79 +1.0 54,673 - GFF6149 0.79 -1.9 54,673 - GFF6149 0.79 +0.2 54,714 + GFF6149 0.82 -0.8 54,714 + GFF6149 0.82 -0.1 54,714 + GFF6149 0.82 -0.3 54,715 - GFF6149 0.82 -0.4 54,715 - GFF6149 0.82 -2.1 54,715 - GFF6149 0.82 -2.7 54,715 - GFF6149 0.82 +1.0 54,825 + +0.2 54,825 + +0.6 54,825 + -2.1 55,093 + +0.6 55,094 - -3.5 55,094 - -2.3 55,094 - -4.6 55,094 - -0.1 55,094 - -2.0 55,094 - -1.8 55,094 - -3.9 55,094 - -0.6 55,094 - -1.3 55,129 + GFF6150 0.11 -1.4 55,345 + GFF6150 0.27 -1.4 55,346 - GFF6150 0.27 -0.4 55,351 + GFF6150 0.27 -0.1 55,351 + GFF6150 0.27 -0.6 55,375 + GFF6150 0.29 -2.5 55,376 - GFF6150 0.29 -2.2 55,376 - GFF6150 0.29 -2.9 55,376 - GFF6150 0.29 -1.0 55,376 - GFF6150 0.29 -0.1 55,408 + GFF6150 0.31 -4.1 55,408 + GFF6150 0.31 +2.2 55,409 - GFF6150 0.32 -1.6 55,606 + GFF6150 0.46 -1.0 55,852 + GFF6150 0.64 -0.1 55,853 - GFF6150 0.64 -1.9 55,853 - GFF6150 0.64 -4.5 55,853 - GFF6150 0.64 -1.3
Or see this region's nucleotide sequence